View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14405_high_8 (Length: 246)
Name: NF14405_high_8
Description: NF14405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14405_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 34958128 - 34957899
Alignment:
| Q |
1 |
ctcaccaaaggtatcattggctctggatacaaaagcacacataagcaaaaaatatgaaaaagcactgtttcaccaagttcaacatttttgtggattcttg |
100 |
Q |
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| T |
34958128 |
ctcaccaaaggtatcattggctctggatacaaaagcacacataagcaaaaaatatgaaaaagcactgtttcaccaagttcaacatttttgtggattcttg |
34958029 |
T |
|
| Q |
101 |
cagcaccaagaagcgccccccaaacggatccatcagcttcaaatggaatggaattcataagttccaccgcttcatttagtttccctgatttccaaggata |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34958028 |
cagcaccaagaagcgcccctcaaacggatccatcagcttcaaatggaatggaattcataagttccaccgcttcatttagtttccctaatttccaaggata |
34957929 |
T |
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| Q |
201 |
tcaatcatgcaagcatagtgctcttgtgtt |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
34957928 |
tcaatcatgcaagcatagtgctcttgtgtt |
34957899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 70 - 230
Target Start/End: Original strand, 50131576 - 50131737
Alignment:
| Q |
70 |
tcaccaagttcaacatttttgtggattcttgcagcaccaagaagcgccccccaaacggatccatcagcttcaaatggaatggaattcataagttccaccg |
169 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| | |
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| T |
50131576 |
tcaccaagttcaacatttttgtggattcttgcagcaccaagaagcgccccccaaacggatccatcggcttcaaatggaatggaattcacaagctccactg |
50131675 |
T |
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| Q |
170 |
cttcatttagtttccctgat-ttccaaggatatcaatcatgcaagcatagtgctcttgtgtt |
230 |
Q |
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| T |
50131676 |
cttcatttagtttccctgatcttccaaggagatcaatcatgcaagcatggtgctcttgtgtt |
50131737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 3922513 - 3922584
Alignment:
| Q |
1 |
ctcaccaaaggtatcattggctctggatacaaaagcacacataagcaaaaaatatgaaaaagcactgtttca |
72 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3922513 |
ctcaccaaaggtatcattggctctggatacaaaagcacacataagcaaaaaatatgaaaaagcactgcttca |
3922584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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