View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14405_low_11 (Length: 238)

Name: NF14405_low_11
Description: NF14405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14405_low_11
NF14405_low_11
[»] chr7 (1 HSPs)
chr7 (8-222)||(43305304-43305518)
[»] chr4 (6 HSPs)
chr4 (8-222)||(44721469-44721683)
chr4 (8-149)||(10820923-10821064)
chr4 (29-122)||(34723292-34723385)
chr4 (79-166)||(19614688-19614775)
chr4 (192-222)||(10820897-10820927)
chr4 (194-222)||(10820629-10820657)
[»] chr5 (2 HSPs)
chr5 (8-222)||(9162734-9162948)
chr5 (29-122)||(30672020-30672113)
[»] chr6 (2 HSPs)
chr6 (29-219)||(12866572-12866747)
chr6 (35-166)||(10824941-10825072)
[»] chr8 (2 HSPs)
chr8 (19-166)||(11661702-11661849)
chr8 (29-118)||(24947145-24947234)
[»] chr1 (3 HSPs)
chr1 (29-118)||(25345095-25345184)
chr1 (29-153)||(22061460-22061584)
chr1 (139-195)||(25345190-25345246)


Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 43305304 - 43305518
Alignment:
Q  8 gaatgtacgtgtggaatctagtttgtcatagaattatttgttgagttgtatatgaatattttgcaggctgtaaacactcaaactaatgagagtagaatag 107  Q
    ||||||| || || ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  43305304 gaatgtaagtttgaaatctcgtttgtcatagaattatttattgagttgtatatgaatattttgcaggctgtaaacattcaaactaacgagagtagaatag 43305403  T
Q  108 ctgggaatgttgaatttgtgaactctactgttgaacttgaactactatcaacactgccaccgagtttggaggggaaaaatgatgtgaacgaaggtgaagg 207  Q
    |||||||||||||||   |||||||||||  |||||||||||||||| || |||||||||||||| |||||||||||||||||||| || ||||||||||    
T  43305404 ctgggaatgttgaatccatgaactctactactgaacttgaactactagcaccactgccaccgagtatggaggggaaaaatgatgtggacaaaggtgaagg 43305503  T
Q  208 ttccaatgataaaca 222  Q
    |||||||||||||||    
T  43305504 ttccaatgataaaca 43305518  T

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Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 44721683 - 44721469
Alignment:
Q  8 gaatgtacgtgtggaatctagtttgtcatagaattatttgttgagttgtatatgaatattttgcaggctgtaaacactcaaactaatgagagtagaatag 107  Q
    ||||||| || || ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  44721683 gaatgtaagtttgaaatctcgtttgtcatagaattatttattgagttgtatatgaatattttgcaggctgtaaacattcaaactaacgagagtagaatag 44721584  T
Q  108 ctgggaatgttgaatttgtgaactctactgttgaacttgaactactatcaacactgccaccgagtttggaggggaaaaatgatgtgaacgaaggtgaagg 207  Q
    |||||||||||||||   |||||||||||  |||||||||||||||| || |||||||||||||| |||||||||||||||||||| || ||||||||||    
T  44721583 ctgggaatgttgaatccatgaactctactactgaacttgaactactagcaccactgccaccgagtatggaggggaaaaatgatgtggacaaaggtgaagg 44721484  T
Q  208 ttccaatgataaaca 222  Q
    |||||||||||||||    
T  44721483 ttccaatgataaaca 44721469  T

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Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 10821064 - 10820923
Alignment:
Q  8 gaatgtacgtgtggaatctagtttgtcatagaattatttgttgagttgtatatgaatattttgcaggctgtaaacactcaaactaatgagagtagaatag 107  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10821064 gaatgtatgtttggaatctagtttgtcatagaattatttgttgagttgtatatgaatatttagcaggctgtaaacactcaaactaatgagagtagaatag 10820965  T
Q  108 ctgggaatgttgaatttgtgaactctactgttgaacttgaac 149  Q
    |||||||||||||||||||||||||||||| ||||| |||||    
T  10820964 ctgggaatgttgaatttgtgaactctactgctgaacctgaac 10820923  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 122
Target Start/End: Original strand, 34723292 - 34723385
Alignment:
Q  29 tttgtcatagaattatttgttgagttgtatatgaatattttgcaggctgtaaacactcaaactaatgagagtagaatagctgggaatgttgaat 122  Q
    ||||| ||||||||||||||| | | |||| || ||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  34723292 tttgttatagaattatttgttaattcgtatgtgtatactttgcaggctgaaaacactcaaactaataagagtagaatagctgggaatgttgaat 34723385  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 79 - 166
Target Start/End: Original strand, 19614688 - 19614775
Alignment:
Q  79 aaacactcaaactaatgagagtagaatagctgggaatgttgaatttgtgaactctactgttgaacttgaactactatcaacactgcca 166  Q
    ||||| ||||||||||||||||||||||||||||||||||||||   |||||||||||| ||||| |||||||||  ||||| |||||    
T  19614688 aaacattcaaactaatgagagtagaatagctgggaatgttgaatccatgaactctactgctgaacctgaactacttgcaacattgcca 19614775  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 222
Target Start/End: Complemental strand, 10820927 - 10820897
Alignment:
Q  192 tgaacgaaggtgaaggttccaatgataaaca 222  Q
    |||||||||||||||||||||||||||||||    
T  10820927 tgaacgaaggtgaaggttccaatgataaaca 10820897  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 222
Target Start/End: Original strand, 10820629 - 10820657
Alignment:
Q  194 aacgaaggtgaaggttccaatgataaaca 222  Q
    |||||||||||||||||||||||||||||    
T  10820629 aacgaaggtgaaggttccaatgataaaca 10820657  T

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Target: chr5 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 9162734 - 9162948
Alignment:
Q  8 gaatgtacgtgtggaatctagtttgtcatagaattatttgttgagttgtatatgaatattttgcaggctgtaaacactcaaactaatgagagtagaatag 107  Q
    ||||||| || |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||  ||||||||| |||||||||||||    
T  9162734 gaatgtaagtttggaatcttgtttgtcatagaattatttattgagttgtatatgaatattttgcaggctataaactttcaaactaacgagagtagaatag 9162833  T
Q  108 ctgggaatgttgaatttgtgaactctactgttgaacttgaactactatcaacactgccaccgagtttggaggggaaaaatgatgtgaacgaaggtgaagg 207  Q
    |||||||||||||||   |||||||||||| |||||||||||||||| || |||||||||||||| ||||| |||||||| |||||||  ||||||||||    
T  9162834 ctgggaatgttgaatccatgaactctactgctgaacttgaactactagcaccactgccaccgagtatggagaggaaaaattatgtgaataaaggtgaagg 9162933  T
Q  208 ttccaatgataaaca 222  Q
    |||||||||||||||    
T  9162934 ttccaatgataaaca 9162948  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 29 - 122
Target Start/End: Original strand, 30672020 - 30672113
Alignment:
Q  29 tttgtcatagaattatttgttgagttgtatatgaatattttgcaggctgtaaacactcaaactaatgagagtagaatagctgggaatgttgaat 122  Q
    ||||| ||||||||||||||| | | |||| || ||| ||||||||||| |||||||||||||||| |||||||||||||||  ||||||||||    
T  30672020 tttgttatagaattatttgttaattcgtatgtgtatactttgcaggctgaaaacactcaaactaataagagtagaatagctgaaaatgttgaat 30672113  T

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Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 29 - 219
Target Start/End: Complemental strand, 12866747 - 12866572
Alignment:
Q  29 tttgtcatagaattatttgttgagttgtatatgaatattttgcaggctgtaaacactcaaactaatgagagtagaatagctgggaatgttgaatttgtga 128  Q
    ||||| ||||||||||||||||||| ||||||| ||||||||||||||| ||| | |||||||||||||||||||||||||||||||||               
T  12866747 tttgttatagaattatttgttgagtcgtatatggatattttgcaggctgaaaatattcaaactaatgagagtagaatagctgggaatgt----------- 12866659  T
Q  129 actctactgttgaacttgaactactatcaacactgccaccgagtttggaggggaaaaatgatgtgaacgaaggtgaaggttccaatgataa 219  Q
        ||||| ||||| |||||||||  |||||||| || ||||| ||||||||||||||||||||||||  ||||||||||||||||||||    
T  12866658 ----tactgctgaacctgaactacttgcaacactgtcatcgagtatggaggggaaaaatgatgtgaacgttggtgaaggttccaatgataa 12866572  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 35 - 166
Target Start/End: Complemental strand, 10825072 - 10824941
Alignment:
Q  35 atagaattatttgttgagttgtatatgaatattttgcaggctgtaaacactcaaactaatgagagtagaatagctgggaatgttgaatttgtgaactcta 134  Q
    ||||||||||||||| | | |||| || | | ||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||   | |||||||    
T  10825072 atagaattatttgttaattcgtatgtgtacactttgcagactgaaaacattcaaactaatgagagtagaatagctgggaatgttgaatccataaactcta 10824973  T
Q  135 ctgttgaacttgaactactatcaacactgcca 166  Q
    ||||||||| | |||||||   ||||||||||    
T  10824972 ctgttgaacctaaactacttgaaacactgcca 10824941  T

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Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 11661849 - 11661702
Alignment:
Q  19 tggaatctagtttgtcatagaattatttgttgagttgtatatgaatattttgcaggctgtaaacactcaaactaatgagagtagaatagctgggaatgtt 118  Q
    ||||||||  ||||| ||||||||||||||| | | |||| || ||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  11661849 tggaatcttctttgttatagaattatttgttaattcgtatgtgtatactttgcaggctgaaaacattcaaactaatgagagtagaatagctgggaatgtt 11661750  T
Q  119 gaatttgtgaactctactgttgaacttgaactactatcaacactgcca 166  Q
    ||||   |||||||||||| |||||||||||||||  ||||| |||||    
T  11661749 gaatccatgaactctactgctgaacttgaactacttgcaacattgcca 11661702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 24947145 - 24947234
Alignment:
Q  29 tttgtcatagaattatttgttgagttgtatatgaatattttgcaggctgtaaacactcaaactaatgagagtagaatagctgggaatgtt 118  Q
    ||||||||| ||||||||||||||| ||||||| |||||||||| |||| ||||| ||||||||| ||||||||||||||||||||||||    
T  24947145 tttgtcatataattatttgttgagtcgtatatggatattttgcaagctgaaaacattcaaactaaagagagtagaatagctgggaatgtt 24947234  T

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Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 25345095 - 25345184
Alignment:
Q  29 tttgtcatagaattatttgttgagttgtatatgaatattttgcaggctgtaaacactcaaactaatgagagtagaatagctgggaatgtt 118  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||| |||| |||||||||||||||| | ||||||||||    
T  25345095 tttgtcatagaattatttgttgagtcgtatatggatattttgcaggctgaaaacattcaatctaatgagagtagaatggttgggaatgtt 25345184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 153
Target Start/End: Original strand, 22061460 - 22061584
Alignment:
Q  29 tttgtcatagaattatttgttgagttgtatatgaatattttgcaggctgtaaacactcaaactaatgagagtagaatagctgggaatgttgaatttgtga 128  Q
    ||||| ||||||||||||||| | | |||| || ||| ||||||| ||| ||||| |||||||||||||| |||||||||||||||||||||||   |||    
T  22061460 tttgttatagaattatttgttaattcgtatgtgtatactttgcagactgaaaacattcaaactaatgagattagaatagctgggaatgttgaatccatga 22061559  T
Q  129 actctactgttgaacttgaactact 153  Q
    ||||||||| ||||| |||||||||    
T  22061560 actctactgctgaacctgaactact 22061584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 25345190 - 25345246
Alignment:
Q  139 tgaacttgaactactatcaacactgccaccgagtttggaggggaaaaatgatgtgaa 195  Q
    ||||| |||||||||  ||||||||||| ||||| |||| |||||||||||||||||    
T  25345190 tgaacctgaactacttgcaacactgccatcgagtatggatgggaaaaatgatgtgaa 25345246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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