View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14405_low_5 (Length: 316)
Name: NF14405_low_5
Description: NF14405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14405_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 33 - 297
Target Start/End: Complemental strand, 34958404 - 34958135
Alignment:
| Q |
33 |
tggatccctccaactaatctgaaattgtagcttttctaaaatggtagctaattgatcaacccttttttgtgcattccttccaatgactctcaacctatca |
132 |
Q |
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| T |
34958404 |
tggatccctccaactgatcagaaattgtagcttttctaaaatggtagctaattgatcaacccttttttgtgcattcctgccaatgactctcaacctatca |
34958305 |
T |
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| Q |
133 |
tacctctttctcaaatcttcacctccagtttgagttggaaagaaatcaagttcttcttctaaatcatcagaatttgttgtatcagcaccaga-----taa |
227 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34958304 |
tacctccttctcaaatcttcacctccagtttgagttggaaagaaatcaagttcttcttctaaatcatcagaatttgttgtatcagcaccagataatataa |
34958205 |
T |
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| Q |
228 |
tgttgcatctatgtgataaggatgctcatgcttcttgaaattataatcatccaaaccaatcttgaaaaga |
297 |
Q |
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| T |
34958204 |
tgttgcatctatgtgacaaggatgctcatgctttttgaaattataattatccaaaccaatcttgaaaaga |
34958135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 3922220 - 3922506
Alignment:
| Q |
11 |
ccaagaatataaatgtagattttggatccctccaactaatctgaaattgtagcttttctaaaatggtagctaattgatcaacccttttttgtgcattcct |
110 |
Q |
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|||| ||||||||||||| | |||||||||||||||| ||| || |||||||||||||||||||||| || |||| |||||||||||||||| ||||||| |
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| T |
3922220 |
ccaaaaatataaatgtagctcttggatccctccaactgatcagagattgtagcttttctaaaatggtggccaattcatcaacccttttttgtccattcct |
3922319 |
T |
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| Q |
111 |
tccaatgactctcaacctatcatacctctttctcaaatcttcacctccagtttgagttggaaagaaatcaagttcttcttctaaatcatcagaatttgtt |
210 |
Q |
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| T |
3922320 |
accaatgactctcaacctatcatacctccttctcaaatgttcacctccaatttgagttggaaagaaaacaagttcttcttctaaatcatcataatttgtt |
3922419 |
T |
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| Q |
211 |
gtatcagcaccagataatgttgcatctatgtgataaggatgctcatgcttcttgaaattataatcatccaaaccaatcttgaaaaga |
297 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3922420 |
gtatcagcaccagataatgttgcatctatgtgacaaggatgctcatgcttcttgaaattataattatccaaaccaatcttgaaaaga |
3922506 |
T |
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