View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14405_low_6 (Length: 301)
Name: NF14405_low_6
Description: NF14405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14405_low_6 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 301
Target Start/End: Original strand, 50399617 - 50399902
Alignment:
| Q |
16 |
acacacacaccatgtaatgactttctctaccaattacaggttccctttttctcacaaatggatgatcaactacttgatgcaatatgcgagcgattggtat |
115 |
Q |
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| T |
50399617 |
acacacacaccatgtaatgactttctctaccaattacaggttccctttttctcacaaatggatgatcaactacttgatgcaatatgcgagcgattggtat |
50399716 |
T |
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| Q |
116 |
catccttgagtactcaaggcacatacattgtcagagaaggagatccagttaccgagatgctttttatcatcagagggagacttgaaagctcaaccacaaa |
215 |
Q |
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| T |
50399717 |
catccttgagtactcaaggcacatacattgtcagagaaggagatccagttaccgagatgctttttatcatcagagggagacttgaaagctcaaccacaaa |
50399816 |
T |
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| Q |
216 |
tgggggcagaactggtttctttaactctattaccttaaagcctggtgatttctgtggagaagagttacttgcttgggcattgcttc |
301 |
Q |
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| T |
50399817 |
tgggggcagaactggtttctttaactctattaccttaaagcctggtgatttctgtggagaagagttacttgcttgggcattgcttc |
50399902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 191
Target Start/End: Original strand, 40678124 - 40678245
Alignment:
| Q |
70 |
caaatggatgatcaactacttgatgcaatatgcgagcgattggtatcatccttgagtactcaaggcacatacattgtcagagaaggagatccagttaccg |
169 |
Q |
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| T |
40678124 |
caaatggatgatcagcttctagatgctatatgcgaacgtttagtatcatcattgaacacaaaaggctcatacatagttagagaaggtgatccagtgaaag |
40678223 |
T |
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| Q |
170 |
agatgctttttatcatcagagg |
191 |
Q |
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| T |
40678224 |
agatgctttttatcatcagagg |
40678245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 242
Target Start/End: Original strand, 24979308 - 24979498
Alignment:
| Q |
52 |
caggttccctttttctcacaaatggatgatcaactacttgatgcaatatgcgagcgattggtatcatccttgagtactcaaggcacatacattgtcagag |
151 |
Q |
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| T |
24979308 |
caggttcccttcttctcacaaatggatgatcagcttcttgatgcgatatgtgagcggctggtatcttctctaagcactctaggcacctacattgttcgtg |
24979407 |
T |
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| Q |
152 |
aaggagatccagttaccgagatgctttttatcatcagagggagacttgaaagctcaaccacaaatgggggcagaactggtttctttaactc |
242 |
Q |
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| T |
24979408 |
agggtgaccctgtaactgaaatgttgtttatcattagaggcagactagatagttctacaacaaatggtggccggactggtttcttcaactc |
24979498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 101
Target Start/End: Complemental strand, 13112633 - 13112596
Alignment:
| Q |
64 |
ttctcacaaatggatgatcaactacttgatgcaatatg |
101 |
Q |
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| T |
13112633 |
ttctcacaaatggatgatcaactacttgatgcaatatg |
13112596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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