View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14405_low_7 (Length: 294)
Name: NF14405_low_7
Description: NF14405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14405_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 31 - 278
Target Start/End: Complemental strand, 27472344 - 27472114
Alignment:
| Q |
31 |
tctgacttatttgcttgtctctcttttttctgacttacttgcttctgcatatgcaggtagaattcatctagcaaagatttgaattaaatgcaatatagca |
130 |
Q |
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| T |
27472344 |
tctgacttatttgcttgtctctcttttttctgacttacttgcttcggtatatgcaggcagaattaatttagcaaagaattgaattgaaagcaatatggca |
27472245 |
T |
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| Q |
131 |
ttttttaatatagcannnnnnnnnnctgttgctaagggcttgtcgttcttgtttctttgtagctcatcagggcatgttttgcgaatgttttatgttgaca |
230 |
Q |
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| |||| |||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||| | |||||||||||||| |
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| T |
27472244 |
tgtttt-----------------ttctgttgctaagggcttgttgttcttgtttctttgaagctcatcatagcatgttttgcggaggttttatgttgaca |
27472162 |
T |
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| Q |
231 |
catgtaaatttaggtttggtacttgctaaggtagtaagttgtgtcaat |
278 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||| ||||| |
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| T |
27472161 |
catgtaaatttaggttttgtacttgctaaggtagtaagctgtctcaat |
27472114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 31 - 278
Target Start/End: Complemental strand, 27484174 - 27483944
Alignment:
| Q |
31 |
tctgacttatttgcttgtctctcttttttctgacttacttgcttctgcatatgcaggtagaattcatctagcaaagatttgaattaaatgcaatatagca |
130 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||| ||||||||| ||||||| ||| |||||||||| |
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| T |
27484174 |
tctgacttatttgcttgtctctcttttttctgacttacttgcttctgtatatgcaggaagtattcatttagcaaagaattgaattcaattcaatatagca |
27484075 |
T |
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| Q |
131 |
ttttttaatatagcannnnnnnnnnctgttgctaagggcttgtcgttcttgtttctttgtagctcatcagggcatgttttgcgaatgttttatgttgaca |
230 |
Q |
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| T |
27484074 |
tgtttt-----------------ttctgttgctaagggcatgtctttcttgtttcttagcagctcatcatagcatgttttgcggaggttttatgttgaca |
27483992 |
T |
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| Q |
231 |
catgtaaatttaggtttggtacttgctaaggtagtaagttgtgtcaat |
278 |
Q |
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||||||||||||||||| ||| |||||||||||||||| ||||||||| |
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| T |
27483991 |
catgtaaatttaggttttgtatttgctaaggtagtaagctgtgtcaat |
27483944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 22 - 259
Target Start/End: Original strand, 27519212 - 27519430
Alignment:
| Q |
22 |
ctctcctcctctgacttatttgcttgtctctcttttttctgacttacttgcttctgcatatgcaggtagaattcatctagcaaagatttgaattaaatgc |
121 |
Q |
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| T |
27519212 |
ctctcctcctctcacttatttgcttgtctctcttttttctgacttacttgcttctgtatatgcaggaagaattcatttagcaaagaattgaatt-aatgc |
27519310 |
T |
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| Q |
122 |
aatatagcattttttaatatagcannnnnnnnnnctgttgctaagggcttgtcgttcttgtttctttgtagctcatcagggcatgttttgcgaatgtttt |
221 |
Q |
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| T |
27519311 |
aatatatcatgtttt-----------------ttctgtttctaagggcttgttgttcttgtttctttgtagctcatcatagcatgttttgcggaggtttt |
27519393 |
T |
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| Q |
222 |
atgttgacacatgtaaatttaggtttggtacttgctaa |
259 |
Q |
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| T |
27519394 |
atgttg-cagatgtaaatttaggttttgtacttgctaa |
27519430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 156 - 278
Target Start/End: Complemental strand, 27463629 - 27463507
Alignment:
| Q |
156 |
ctgttgctaagggcttgtcgttcttgtttctttgtagctcatcagggcatgttttgcgaatgttttatgttgacacatgtaaatttaggtttggtacttg |
255 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||| ||||||| |
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| T |
27463629 |
ctgttgctaagggtttgttgttcttgtttctttgtagctcatcatagcatgttttgcagaggttttatgttgacacatgtaaatttaggttttgtacttg |
27463530 |
T |
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| Q |
256 |
ctaaggtagtaagttgtgtcaat |
278 |
Q |
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| T |
27463529 |
ctaaggtagtaagctgtgtcaat |
27463507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 27463717 - 27463680
Alignment:
| Q |
18 |
tttcctctcctcctctgacttatttgcttgtctctctttt |
57 |
Q |
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| T |
27463717 |
tttcctctcctcct--gacttatttgcttgtctctctttt |
27463680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 27919435 - 27919316
Alignment:
| Q |
18 |
tttcctctcctcctctgacttatttgcttgtctctcttttttctgacttacttgcttctgcatatgcaggtagaattcatctagcaaagatttgaattaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||| ||||||| | |
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| T |
27919435 |
tttcctctcctcctctgacttatttgcttgtctctcttttttctgacttacttgcttctgtatatgcaggcagaattcatttagcaaagaattgaattga |
27919336 |
T |
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| Q |
118 |
atgcaatatagcatttttta |
137 |
Q |
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||||||| |||||| ||||| |
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| T |
27919335 |
atgcaatttagcatgtttta |
27919316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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