View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14405_low_8 (Length: 285)
Name: NF14405_low_8
Description: NF14405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14405_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 150 - 275
Target Start/End: Original strand, 55982647 - 55982772
Alignment:
| Q |
150 |
ttaatcttactctgaagttcttacagtccaagattcttccctgatggcttaactctacttcacatacatgcacatgaaattttctaattcaaaaatctta |
249 |
Q |
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| T |
55982647 |
ttaatcttactctgaagttcttacagtccaagattcttccctgatggcttaactctacttcacatacatgcacatgaacttttctaattcaaaaatctta |
55982746 |
T |
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| Q |
250 |
ctttactttgcaagtgcactcctttg |
275 |
Q |
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| T |
55982747 |
ctttacttagcaagtgcactcctttg |
55982772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 55982529 - 55982589
Alignment:
| Q |
32 |
cccaaaaaagaataaggtaacttggcaacaaaaaccatatttttaaatgtaaattgcatcc |
92 |
Q |
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| T |
55982529 |
cccaaaaaagaataaggtaacttggcaacaaaaaccatatttttaaatgtaaattgcatcc |
55982589 |
T |
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