View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14406_high_15 (Length: 357)
Name: NF14406_high_15
Description: NF14406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14406_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 15 - 348
Target Start/End: Complemental strand, 39272744 - 39272412
Alignment:
| Q |
15 |
aagaacatgtgttggtgttagtgcttacaagttttctacaccaacacgtcttcaatatcaagtgttggtactacacagtgnnnnnnnncttcctctaata |
114 |
Q |
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| T |
39272744 |
aagaacatgtgttggcgttagtgcttacaagttttctacaccaacacgtcttcaatatgaagtgttggtactacacagtgtgtttttt-ttcctctaata |
39272646 |
T |
|
| Q |
115 |
gcatagtatgttctgtttcaaacagcaattgacccaggcgacgaagtcatactctttgacccttcctatgaaacatatcaaggatgtgttaccatggctg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39272645 |
gcatagtatgttctgtttcaaacagcaattgacccaggcgacgaagtcatactctttgacccttcctatgaaacatatcaaggatgtgttaccatggctg |
39272546 |
T |
|
| Q |
215 |
gtggtgttcctgtaagcttgcattgccaccaatctcaagttttgtttatcggtttaaacttgcattgttgtgtttagttaacaataatcaccaaataatt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
39272545 |
gtggtgttcctgtaagcttgcattgccaccaatctcaagttttgtttatcggtttaaacttgcattgttgtgtttagttgacaataatcaccgaataatt |
39272446 |
T |
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| Q |
315 |
cctcaatctagtccataaactatcaccctctcct |
348 |
Q |
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|||||||||||||||||||||||||| ||||||| |
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| T |
39272445 |
cctcaatctagtccataaactatcactctctcct |
39272412 |
T |
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