View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14406_high_16 (Length: 356)
Name: NF14406_high_16
Description: NF14406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14406_high_16 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 60 - 356
Target Start/End: Complemental strand, 40434197 - 40433907
Alignment:
| Q |
60 |
attgtatgtgtttttgttcgttgaggtatgcttgtgaacatgtttaaaattgtacttggaattgaatgaccaaatgaggttaggaaaccaagtccaacat |
159 |
Q |
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| T |
40434197 |
attgtatgtgtttttgttcgttgaggtatgcttgtgaacatgtttaaaattgtacttggaattgaatgaccaaatgaggttaggaaaccaa------cat |
40434104 |
T |
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| Q |
160 |
catatacggatatagtttattatgaaattaatcatgttatagttggatgtaagagtcattatgaagttgtgttaattggaaatacacatatgatcttggt |
259 |
Q |
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| T |
40434103 |
catatacggatatagtttattatgaaattaatcatgttatagttggatgtaagggtcattatgaagttgtgttaattggaaatacacatatgatcttggt |
40434004 |
T |
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| Q |
260 |
tgtcctgttgtctaatttaaattggagttcctcatataattccatatagaaaactgttgttgctattagttgttttaaaaatttgttgttgctattc |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40434003 |
tgtcctgttgtctaatttaaattggagttcctcatataatgccatatagaaaactgttgttgctattagttgttttaaaaatttgttgttgctattc |
40433907 |
T |
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