View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14406_high_21 (Length: 290)
Name: NF14406_high_21
Description: NF14406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14406_high_21 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 14 - 290
Target Start/End: Original strand, 36928570 - 36928846
Alignment:
| Q |
14 |
tcatcatcttcttgcagtaatatacatcatacatggttcacatttgtttaaaagctctaatgcatttgaatcacaatattttgtataaaaattatcaatc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36928570 |
tcatcatcttcttgcagtaatatacatcatacatggttcacatttgtttaaaagctctaatgcatttgaatcacaatattttgtataaaaattatcaatc |
36928669 |
T |
|
| Q |
114 |
gttcttggcaggtaatgatgttggatcttgtcatccaatgtgaaaataggctccatttcgtcaacttagatggcatcaaagctctgttactggatgaaaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36928670 |
gttcttggcaggtaatgatgttggatcttgtcatccaatgtgaaaataggctccatttcgtcaacttagatggcatcaaagctctgttactggatgaaaa |
36928769 |
T |
|
| Q |
214 |
aattgggagaatcgagtagccttaaacaattgacctgttatttgggaactgttctttctcgttgtgtccatgatttt |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36928770 |
aattgggagaatcgagtagccttaaacaattgacctgttatttgggaactgttctttctcgttgtgtccatgatttt |
36928846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University