View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14406_high_23 (Length: 256)
Name: NF14406_high_23
Description: NF14406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14406_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 46233949 - 46234186
Alignment:
| Q |
1 |
gaaatggagaaatcggaacagtggttttaaattgcggctgcaacataaaaaccacaattaaaaaccatgattggaacagaattgatttacctacaagccc |
100 |
Q |
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| T |
46233949 |
gaaatggagaaatcggaacagtggttttaaattgcggctgcaacataaaaaccacaattaaaaaccatgattggaacagaattgatttacctacaagccc |
46234048 |
T |
|
| Q |
101 |
aaaacttgaaaaaatgtatgaaagtgtaaaataaattccaaacttacttctttctcagtcgggcttaaggcatatggctctaaatctatatccatcttga |
200 |
Q |
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| T |
46234049 |
aaaacttgaaaaaatgtatgaaagtgtaaaataaattccaaacttacttctttctcagtcgggcttaaggcatatggctctaaatctatatccatcttga |
46234148 |
T |
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| Q |
201 |
agccaacattcttgttttcttttcgagtatgacctttt |
238 |
Q |
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| T |
46234149 |
agccaacattcttgttttcttttcgagtatgacctttt |
46234186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 27984295 - 27984347
Alignment:
| Q |
95 |
aagcccaaaacttgaaaaaatgtatgaaagtgtaaaataaattccaaacttac |
147 |
Q |
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| T |
27984295 |
aagccaaaaacttgaaaaaatgtatgaaagtgtaaaagaaattccaaacttac |
27984347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 28041597 - 28041649
Alignment:
| Q |
95 |
aagcccaaaacttgaaaaaatgtatgaaagtgtaaaataaattccaaacttac |
147 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28041597 |
aagccaaaaacttgaaaaaatgtatgaaagtgtaaaagaaattccaaacttac |
28041649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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