View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14406_high_3 (Length: 625)
Name: NF14406_high_3
Description: NF14406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14406_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 208 - 614
Target Start/End: Original strand, 15607071 - 15607475
Alignment:
| Q |
208 |
taatatttactagttaacctttgactttctttgaggtatatgcttgaataacatacacatatcatttgtacgtttcatatttattaggcattgacactca |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
15607071 |
taatatttactagttaacctttgactttctttgagttat--gcttgaataacatacacatatcatttgtacttttcatatttattaggtattgacactca |
15607168 |
T |
|
| Q |
308 |
tatttatgtttgtcctgaaagagatgaaactcttatctcctttgtagtgtatcaaaaagtaaatgttaatagtaccctctttattcacgaaatgttggca |
407 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15607169 |
tatttatgtttatcctgaaagagatgaaactcttatctactatatagtgtatcaaaaagtaaatgttaatagtaccctctttattcacgaaatgttggca |
15607268 |
T |
|
| Q |
408 |
ctgaggattttggtacatggtgatatgtgttgtgcagggattaccaacaaggtagcaaaaactctcacctcaaagctaaaaaactcattgacgaaatcca |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15607269 |
ctgaggattttggtacatggtgatatgtgtgatgcagggattaccaacaaggtggcaaaaactctcacctcaaagctaaaaaactcattgacgaaatccg |
15607368 |
T |
|
| Q |
508 |
ttattggttcactcaatccaatggtaaaaatcacttaattccagtttatatctcgaattttgttttattctgattctgaacatcgttccttcccaaagcc |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
15607369 |
ttattggttcactcaatccaatggtaaaaatcacttaattccggtttataactcgaattttgttttattctgattctgtacattgttccttcccaaagcc |
15607468 |
T |
|
| Q |
608 |
acttcat |
614 |
Q |
| |
|
||||||| |
|
|
| T |
15607469 |
acttcat |
15607475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 208 - 614
Target Start/End: Original strand, 15638589 - 15638994
Alignment:
| Q |
208 |
taatatttactagttaacctttgactttctttgaggtatatgcttgaataacatacacatatcatttgtacgtttcatatttattaggcattgacactca |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
15638589 |
taatatttactagttaacctttgactttctttgaggtatatgcttgaataacatacacatatcatttgtacttttcatatttattaggtattgacactca |
15638688 |
T |
|
| Q |
308 |
tatttatgtttgtcctgaaagagatgaaactcttatctcctttgtagtgtatcaaaaagtaaatgttaatagtaccctctttattcacgaaatgttggca |
407 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||| || | ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
15638689 |
tatttatgcttatcctgaaagagatgaaactcttatctactatatagagtatcaaaaagtaaatgttaatagtaccctctttattcacgaaatgtttgca |
15638788 |
T |
|
| Q |
408 |
ctgaggattttggtacatggtgatatgtgttgtgcagggattaccaacaaggtagcaaaaactctcacctcaaagctaaaaaactcattgacgaaatcca |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15638789 |
ctgaggattttggtacatggtgatatgtgtgatgcagggattaccaacaaggtggcaaaaactctcacctcaaagctaaaaaactcattgacgaaatccg |
15638888 |
T |
|
| Q |
508 |
ttattggttcactcaatccaatggtaaaaatcacttaattccagtttatatctcgaattttgttttattctgattctgaacatcgttccttcccaaagcc |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||| ||||||||||| |||| |
|
|
| T |
15638889 |
ttattggttcactcaatccaatggtaaaaatcacttaattccagtttataactcgaa-tttgttttattctgattctatacattgttccttcccagagcc |
15638987 |
T |
|
| Q |
608 |
acttcat |
614 |
Q |
| |
|
||||||| |
|
|
| T |
15638988 |
acttcat |
15638994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 208 - 614
Target Start/End: Original strand, 15615426 - 15615820
Alignment:
| Q |
208 |
taatatttactagttaacctttgactttctttgaggtatatgcttgaataacatacacatatcatttgtacgtttcatatttattaggcattgacactca |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
15615426 |
taatatttactagttaacctttgactttctttgaggtat--gcttgaataacatacacatatcatttgtacttttcatatttattaggtattgacactca |
15615523 |
T |
|
| Q |
308 |
tatttatgtttgtcctgaaagagatgaaactcttatctcctttgtagtgtatcaaaaagtaaatgttaatagtaccctctttattcacgaaatgttggca |
407 |
Q |
| |
|
||||||| | | ||| |||||||||| || | ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
15615524 |
tatttatt----------aggtattgacactcttatctactatatagagtatcaaaaagtaaatgttaatagtaccctctttattcacgaaatgtttgca |
15615613 |
T |
|
| Q |
408 |
ctgaggattttggtacatggtgatatgtgttgtgcagggattaccaacaaggtagcaaaaactctcacctcaaagctaaaaaactcattgacgaaatcca |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
15615614 |
ctgaggattttggtacatggtgatatgtgtgatgcagggattaccaacaaggtggcaaaaactctcacctcaaagctaaaaaactcattgacgaaatacg |
15615713 |
T |
|
| Q |
508 |
ttattggttcactcaatccaatggtaaaaatcacttaattccagtttatatctcgaattttgttttattctgattctgaacatcgttccttcccaaagcc |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
15615714 |
ttattggttcactcaatccaatggtaaaaatcacttaattccggtttataactcgaattttgttttattctgattctgtacattgttccttcccaaagcc |
15615813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 208 - 449
Target Start/End: Original strand, 15649752 - 15649991
Alignment:
| Q |
208 |
taatatttactagttaacctttgactttctttgaggtatatgcttgaataacatacacatatcatttgtacgtttcatatttattaggcattgacactca |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| |
|
|
| T |
15649752 |
taatatttactagttaacctttgactttctttgaggtat--gcttgaataacatacacatatcatttgtacttttcatagttattaggtattgacactca |
15649849 |
T |
|
| Q |
308 |
tatttatgtttgtcctgaaagagatgaaactcttatctcctttgtagtgtatcaaaaagtaaatgttaatagtaccctctttattcacgaaatgttggca |
407 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| || | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15649850 |
tatttatgtttatcctgaaagagatgaaactcttatctactatatagtgtatcaaacagtaaatgttaatagtaccctctttattcacgaaatgttggca |
15649949 |
T |
|
| Q |
408 |
ctgaggattttggtacatggtgatatgtgttgtgcagggatt |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15649950 |
ctgaggattttggtacatggtgatatgtgtgatgcagggatt |
15649991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 208 - 449
Target Start/End: Original strand, 15625992 - 15626234
Alignment:
| Q |
208 |
taatatttactagttaacctttgactttctttgaggtatatgcttgaataacatacacatatcatttgtacgtttcatatttattaggcattgacactca |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
15625992 |
taatatttactagttaacctttgactttctttgaggtat--gcttaaataacatacacatatcatttgtacttttcatatttattaggtattgacactca |
15626089 |
T |
|
| Q |
308 |
tatttatgtttgtcctgaaagagatgaaactcttatctcctttgtagtgtatcaaaaagtaaatgttaa---tagtaccctctttattcacgaaatgttg |
404 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| || | |||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
15626090 |
tatttatgtttatcctgaaagagatgaaactcttatctactatatagtgtatcaaaaattaaatgttaatagtagtaccctctttattcacgaaatgttt |
15626189 |
T |
|
| Q |
405 |
gcactgaggattttggtacatggtgatatgtgttgtgcagggatt |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15626190 |
gcactgaggattttggtacatggtgatatgtgtgatgcagggatt |
15626234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 446 - 614
Target Start/End: Complemental strand, 16673161 - 16672992
Alignment:
| Q |
446 |
gattaccaacaaggtagcaaaaactctcacctcaaagctaaaaaactcattgacgaaatccattattggttcactcaatccaatggtaaaaatcacttaa |
545 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||| |||||||||||| || ||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16673161 |
gattaccaacaaggtggcgaaaactctcacctcaaagctgaaaaactcattggtgacgtccgttcttggttcactcaatccaatggtaaaaatcacttaa |
16673062 |
T |
|
| Q |
546 |
ttccagtttatatctcgaattttgttttattctgattctgaac-atcgttccttcccaaagccacttcat |
614 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||| | ||||||||||| || ||||||||||| |
|
|
| T |
16673061 |
ttctcgtttataactcgaattttgttttattctgattctattcaatcgttccttcgcagagccacttcat |
16672992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 15615251 - 15615355
Alignment:
| Q |
34 |
tattagtagccac-accatcttaatttgtagaataggcaaaaactttaactttttgcaaaactgttaagaattgtgtgttgtatgagtatgttatgagat |
132 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15615251 |
tattagtagccaccaccatcttaatttgtagaataggcaagaactttaactttttgcaaaactgttaagaattgtgtgttgtctgagtatgttatgagat |
15615350 |
T |
|
| Q |
133 |
ataag |
137 |
Q |
| |
|
||||| |
|
|
| T |
15615351 |
ataag |
15615355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 34 - 136
Target Start/End: Original strand, 15606896 - 15606999
Alignment:
| Q |
34 |
tattagtagccac-accatcttaatttgtagaataggcaaaaactttaactttttgcaaaactgttaagaattgtgtgttgtatgagtatgttatgagat |
132 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15606896 |
tattagtagccaccaccatcttaatttgtagaataggcaagaactttaactttttgcaaaactgttaagaattgtgtgttgtctgagtatgttatgagat |
15606995 |
T |
|
| Q |
133 |
ataa |
136 |
Q |
| |
|
|||| |
|
|
| T |
15606996 |
ataa |
15606999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 36 - 137
Target Start/End: Original strand, 15638416 - 15638518
Alignment:
| Q |
36 |
ttagtagccac-accatcttaatttgtagaataggcaaaaactttaactttttgcaaaactgttaagaattgtgtgttgtatgagtatgttatgagatat |
134 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15638416 |
ttagtagccaccaccatcttaatttgtagaataggcaagaactttaaccttttgcaaaactgttaagaattgtgtgttgtatgagtatgttatgagatat |
15638515 |
T |
|
| Q |
135 |
aag |
137 |
Q |
| |
|
||| |
|
|
| T |
15638516 |
aag |
15638518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 15625817 - 15625921
Alignment:
| Q |
34 |
tattagtagccac-accatcttaatttgtagaataggcaaaaactttaactttttgcaaaactgttaagaattgtgtgttgtatgagtatgttatgagat |
132 |
Q |
| |
|
||||||||||||| ||||||| |||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15625817 |
tattagtagccaccaccatctaaatttgtaaaataggcaagaactttaactttttgcaaaattgttaagaattgtgtgttgtatgagtatgttatgagat |
15625916 |
T |
|
| Q |
133 |
ataag |
137 |
Q |
| |
|
||||| |
|
|
| T |
15625917 |
ataag |
15625921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 15649577 - 15649681
Alignment:
| Q |
34 |
tattagtagccac-accatcttaatttgtagaataggcaaaaactttaactttttgcaaaactgttaagaattgtgtgttgtatgagtatgttatgagat |
132 |
Q |
| |
|
||||||||||||| ||||||| |||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15649577 |
tattagtagccaccaccatctaaatttgtaaaataggcaagaactttaactttttccaaaactgttaagaattgtgtgttgtatgagtatgttatgagat |
15649676 |
T |
|
| Q |
133 |
ataag |
137 |
Q |
| |
|
||||| |
|
|
| T |
15649677 |
ataag |
15649681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 446 - 530
Target Start/End: Original strand, 15626352 - 15626436
Alignment:
| Q |
446 |
gattaccaacaaggtagcaaaaactctcacctcaaagctaaaaaactcattgacgaaatccattattggttcactcaatccaatg |
530 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||| |
|
|
| T |
15626352 |
gattaccaacaaggtggcaaaaactctcacctcaaagctaaaaaactcattaacgaaatccgttcttggttcactcaatccaatg |
15626436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 446 - 530
Target Start/End: Original strand, 15650109 - 15650193
Alignment:
| Q |
446 |
gattaccaacaaggtagcaaaaactctcacctcaaagctaaaaaactcattgacgaaatccattattggttcactcaatccaatg |
530 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| || |||||||| ||||||||||| |
|
|
| T |
15650109 |
gattaccaacaaggtggcaaaaactctcacctcaaagctaaaaaactcattaacgaaatccgttcttggttcattcaatccaatg |
15650193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 320 - 437
Target Start/End: Complemental strand, 13738576 - 13738453
Alignment:
| Q |
320 |
tcctgaaagagatgaaactcttatctcctttgtagtgtatcaaaaagtaaatgttaa--tagtaccctctttattca----cgaaatgttggcactgagg |
413 |
Q |
| |
|
||||| ||| ||||||||||| |||| | | |||||||||||||||||||||| || ||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
13738576 |
tcctggaagggatgaaactctcatctggtatatagtgtatcaaaaagtaaatgtcaatctagcaccctctttatgcatgactgaaatgttggcactgagg |
13738477 |
T |
|
| Q |
414 |
attttggtacatggtgatatgtgt |
437 |
Q |
| |
|
||||| || ||||||||||||||| |
|
|
| T |
13738476 |
atttttgtgcatggtgatatgtgt |
13738453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 449
Target Start/End: Complemental strand, 13765408 - 13765273
Alignment:
| Q |
320 |
tcctgaaagagatgaaactcttatctcctttgtagtgtatcaaaaagtaaatgttaat--agtaccctctttattcacgaa----atgttggcactgagg |
413 |
Q |
| |
|
||||| ||| ||||||||||| |||| | | |||||||||||||| ||||||||||| || ||||||||||| | ||| |||||||| ||||| |
|
|
| T |
13765408 |
tcctggaagggatgaaactctcatctggtatatagtgtatcaaaaaataaatgttaatctagcaccctctttatgtatgaatgaaatgttggctctgaga |
13765309 |
T |
|
| Q |
414 |
attttggtacatggtgatatgtgttgtgcagggatt |
449 |
Q |
| |
|
||||| || ||||||||||||||| |||||||||| |
|
|
| T |
13765308 |
atttttgtgcatggtgatatgtgtgatgcagggatt |
13765273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 323 - 377
Target Start/End: Complemental strand, 11614794 - 11614740
Alignment:
| Q |
323 |
tgaaagagatgaaactcttatctcctttgtagtgtatcaaaaagtaaatgttaat |
377 |
Q |
| |
|
|||||||||||||||||| | || | | |||||||||||||||||||||||||| |
|
|
| T |
11614794 |
tgaaagagatgaaactctgaactggtgtatagtgtatcaaaaagtaaatgttaat |
11614740 |
T |
|
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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 356 - 433
Target Start/End: Original strand, 35080271 - 35080350
Alignment:
| Q |
356 |
gtatcaaaaagtaaatgttaat--agtaccctctttattcacgaaatgttggcactgaggattttggtacatggtgatat |
433 |
Q |
| |
|
|||||||| ||||||||||||| || ||||||||| | | |||||||||| |||||||||||| || |||||||||| |
|
|
| T |
35080271 |
gtatcaaacagtaaatgttaatctagcaccctctttttgaatgaaatgttggtactgaggatttttgtggatggtgatat |
35080350 |
T |
|
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