View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14406_high_6 (Length: 519)
Name: NF14406_high_6
Description: NF14406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14406_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 186 - 508
Target Start/End: Original strand, 41675583 - 41675905
Alignment:
| Q |
186 |
gattgtaattaagagttaactaaagtgagttattagatttatacattggtgaaaaattatatacacatccaagtaaacttcagattaatatttatcatat |
285 |
Q |
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| T |
41675583 |
gattgtaattaagagttaactaaagtgagttattagatttatacattggtgaaaaattatatacacatccaagtaaacttcagattaatatttatcatat |
41675682 |
T |
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| Q |
286 |
tctatgtttgattatatatgttgcatatacatatagttctgttttgctctctgtgtgttgtgaaggaaaagggtctactttttgatagagcttaatagct |
385 |
Q |
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| T |
41675683 |
tctatgtttgattatatatgttgcatatacatatagttctgttttgctctctgtgtgttgtgaaggaaaagggtctactttttgatagagcttaatagct |
41675782 |
T |
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| Q |
386 |
tatgctcttcaatggcttcaacttaccattttaagtagttttagatctacattggaaaacgtacaagcctacaaccttcatgtggtaagtcctgttgtct |
485 |
Q |
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| T |
41675783 |
tatgctcttcaatggcttcaacttaccattttaagtagttttagatctacattggaaaacgtacaagcctacaaccttcatgtggtaagtcctgttgtct |
41675882 |
T |
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| Q |
486 |
agagtctctctctatagttctgt |
508 |
Q |
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| T |
41675883 |
agagtctctctctatagttctgt |
41675905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 41675413 - 41675516
Alignment:
| Q |
16 |
cataaacatggagataattagcataggctagagaagaacatgtctattgcaatattgcatggattcattgtttagatttcacatgtattgttgcatcttg |
115 |
Q |
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| T |
41675413 |
cataaacatggagataattagcataggctagagaagaacatgtctattgcaatattgcatggattcattgtttagatttcacatgtattgttgcatcttg |
41675512 |
T |
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| Q |
116 |
gaca |
119 |
Q |
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| T |
41675513 |
gaca |
41675516 |
T |
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