View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14406_high_7 (Length: 439)
Name: NF14406_high_7
Description: NF14406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14406_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 32 - 424
Target Start/End: Original strand, 44129518 - 44129910
Alignment:
| Q |
32 |
ggttcttgcagatagactctcacaaattcttccctacatagtttctcaaaagcaaatagcatttattcatggtaggaatataaaagactgcatttgtctt |
131 |
Q |
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| T |
44129518 |
ggttcttgcaaatagactctcacaaattcttcccaacatagtttctcaagagcaaagagcattcattcatggtaggaatataaaagactgcatttgtctt |
44129617 |
T |
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| Q |
132 |
acttcagaggcaatcaatcctatgcaggcaaagacatttgaaggaaacttagcaatgaaggaagacataactaaagcactttatactctagaatggggat |
231 |
Q |
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| T |
44129618 |
acttcagaggcaatcaatcttatgcaggcaaagacatttggaggtaacttagcaatgaaggtagacatagctaaagcatttgatactctagaatggggat |
44129717 |
T |
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| Q |
232 |
ttctgttgaaagtattgaaggcttttggattcaataacaccttttgtgactggatgaaagtgattttggactctacatacatctccatatctattgatgg |
331 |
Q |
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||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||| |
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| T |
44129718 |
ttctgttgaaagtgttgaagccttttggattcaatagcaccttttgtgactggatgaaagtgattttggagtctgcatacatctccatatctatcaatgg |
44129817 |
T |
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| Q |
332 |
caaacaaagaggttattttaagtgcaaaagaggagtgagacaggaagaccctctctcacctttacttttctgtcttgcaaaagatgttcttag |
424 |
Q |
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| T |
44129818 |
caaacaaagaggttattttaagtgcaaaagaggagtgagacagggagcccatctctcacctttacttttctgtcttgcagaagatgttcttag |
44129910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 392
Target Start/End: Original strand, 9713490 - 9713522
Alignment:
| Q |
360 |
agaggagtgagacaggaagaccctctctcacct |
392 |
Q |
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| T |
9713490 |
agaggagtgagacagggagaccctctctcacct |
9713522 |
T |
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