View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14406_low_1 (Length: 685)

Name: NF14406_low_1
Description: NF14406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14406_low_1
NF14406_low_1
[»] chr7 (10 HSPs)
chr7 (18-685)||(46629123-46629798)
chr7 (18-338)||(46637303-46637617)
chr7 (464-683)||(46643667-46643886)
chr7 (18-339)||(46618596-46618911)
chr7 (31-268)||(46643199-46643439)
chr7 (477-685)||(46636449-46636657)
chr7 (477-685)||(46617751-46617959)
chr7 (464-682)||(46177017-46177235)
chr7 (158-330)||(46176604-46176773)
chr7 (60-101)||(46176561-46176602)
[»] chr1 (2 HSPs)
chr1 (18-296)||(15769601-15769882)
chr1 (475-683)||(15770075-15770283)
[»] chr3 (1 HSPs)
chr3 (506-539)||(18376224-18376257)


Alignment Details
Target: chr7 (Bit Score: 643; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 18 - 685
Target Start/End: Complemental strand, 46629798 - 46629123
Alignment:
Q  18 aagagttcattatttttggttttgctcagccgaaatcctcctgtcaaagattgtaatatatcactcggtccaagagaagacaaagatttgcaagttggtg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46629798 aagagttcattatttttggttttgctcagccgaaatcctcctgtcaaagattgtaatatatcactcggtccaagagaagacaaagatttgcaagttggtg 46629699  T
Q  118 ctgaaaacgtccgactgttcttcccaggttcgacaccaagcctagtaaggtctcccttcttgttaccaatccctactgcttccacaagaacgtttattcc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46629698 ctgaaaacgtccgactgttcttcccaggttcgacaccaagcctagtaaggtctcccttcttgttaccaatccctactgcttccacaagaacgtttattcc 46629599  T
Q  218 aacagtagacttcaaagaagatatgtatttttctagagaaattctgccctccataaacgactttgaaatctgtgtataacaaatacaagcaaagtgagga 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46629598 aacagtagacttcaaagaagatatgtatttttctagagaaattctgccctccataaacgactttgaaatctgtgtataacaaatacaagcaaagtgagga 46629499  T
Q  318 cagaaacaaatgatatatataaagaaaaaaggcactgatacgggcataaatgttcaaata--------atgttacaatcaaatgataattcaatcagcta 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  46629498 cagaaacaaatgatatatataaagaaaaaaggcactgatacgggcataaatgttcaaataaatgttgtatgttacaatcaaatgataattcaatcagcta 46629399  T
Q  410 ctccattgtaattaccattggaatatacatatgaagttcattaacaacagagaggatgggatggcacagttgaatacctgtaacaaagaatcttgagatt 509  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46629398 ctccattataattaccattggaatatacatatgaagttcattaacaacagagaggatgggatggcacagttgaatacctgtaacaaagaatcttgagatt 46629299  T
Q  510 cttcagatacatgaggaatcaagcgagataataattcatcttgtcttggtccagtaaaaagtttcttcccaatcatacattttctcccctttaacttcat 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46629298 cttcagatacatgaggaatcaagcgagataataattcatcttgtcttggtccagtaaaaagtttcttcccaatcatacattttctcccctttaacttcat 46629199  T
Q  610 gcactccgaccatctacaatatccatcagttttgtaaaactttccatagtaaaatgaaagtatttcccccatccct 685  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46629198 gcactccgaccatctacaatatccatcagttttgtaaaactttccatagtaaaatgaaagtatttcccccatccct 46629123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 46637617 - 46637303
Alignment:
Q  18 aagagttcattatttttggttttgctcagccgaaatcctcctgtcaaagattgtaatatatcactcggtccaagagaagacaaagatttgcaagttggtg 117  Q
    ||||| |||||| ||||||||||||||||||||||||||   |||||| |||| | ||| |||||  ||||||||||||||||||||||||||| |||||    
T  46637617 aagagatcattacttttggttttgctcagccgaaatcct---gtcaaatattgaattatctcactaagtccaagagaagacaaagatttgcaagctggtg 46637521  T
Q  118 ctgaaaacg-tccgactgttcttcccaggttcgacaccaagcctagtaaggtctcccttcttgttaccaatccctactgcttccacaagaacgtttattc 216  Q
    ||| ||||| | | || || |||||||||||| |  ||||||||||| |||||||||||||  |||||||| ||||| ||||||||||| |||   | ||    
T  46637520 ctggaaacgcttcaac-gtccttcccaggttccatgccaagcctagtgaggtctcccttctccttaccaatacctacagcttccacaagtacgccaagtc 46637422  T
Q  217 caacagtagacttcaaagaagatatgtatttttctagagaaattctgccctccataaacgactttgaaatctgtgtataacaaatacaagcaaagtgagg 316  Q
    ||||||||||||||||| |||||||||| | |||||||||| ||| ||||||||||||||||||||||||||||||||   ||||| |||||||||||||    
T  46637421 caacagtagacttcaaaaaagatatgtaatcttctagagaagttccgccctccataaacgactttgaaatctgtgtat---aaatataagcaaagtgagg 46637325  T
Q  317 acagaaacaaatgatatatata 338  Q
    || ||||||||| |||||||||    
T  46637324 actgaaacaaattatatatata 46637303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 464 - 683
Target Start/End: Original strand, 46643667 - 46643886
Alignment:
Q  464 gatgggatggcacagttgaatacctgtaacaaagaatcttgagattcttcagatacatgaggaatcaagcgagataataattcatcttgtcttggtccag 563  Q
    |||| |||| ||||||||||||||||||| || | |||||||||||| ||||| ||||||||||||||||||||||||| ||| | ||| || | ||| |    
T  46643667 gatgagatgtcacagttgaatacctgtaaaaatgtatcttgagattcgtcagagacatgaggaatcaagcgagataatagttcttgttgcctcgctccgg 46643766  T
Q  564 taaaaagtttcttcccaatcatacattttctcccctttaacttcatgcactccgaccatctacaatatccatcagttttgtaaaactttccatagtaaaa 663  Q
     ||||||||||||||| || |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  46643767 caaaaagtttcttccctattatacattttctcccttttaatttcctgcactccgaccatctacaatatccatcagtttcgtaaaactttccatagtaaaa 46643866  T
Q  664 tgaaagtatttcccccatcc 683  Q
    || |||||||||||||||||    
T  46643867 tgtaagtatttcccccatcc 46643886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 46618911 - 46618596
Alignment:
Q  18 aagagttcattatttttggttttgctcagccgaaatcctcctgtcaaagattgtaatatatcactcggtccaagagaagacaaagatttgcaagttggtg 117  Q
    ||||| |||||| ||||||||||||||||||||||||||   |||||| |||| | ||| ||||| ||||||||||||||||||| |||||||| ||||     
T  46618911 aagagatcattacttttggttttgctcagccgaaatcct---gtcaaatattgaattatctcactaggtccaagagaagacaaagctttgcaagctggta 46618815  T
Q  118 ctgaaaacgtccgactgttcttcccaggttcgacaccaagcctagtaaggtctcccttcttgttaccaatccctactgcttccacaagaacgtttattcc 217  Q
    |||  ||||   ||  || |||||||||||| |  |||| |||||||||||||||| |||  |||||||| ||||| ||||||||||| ||    | |||    
T  46618814 ctggcaacgcttgaacgtccttcccaggttccatgccaatcctagtaaggtctcccatctccttaccaatacctacagcttccacaagtacaccaagtcc 46618715  T
Q  218 aacagtagacttcaaagaagatatgtatttttctagagaaattctgccctccataaacgactttgaaatctgtgtataacaaatacaagcaaagtgagga 317  Q
    |||||||||||||||||||||| |||| | |||||||||| |||| |||||||||||||||||||||||||||||||   ||||| ||| ||||||||||    
T  46618714 aacagtagacttcaaagaagatgtgtaatcttctagagaagttcttccctccataaacgactttgaaatctgtgtat---aaatataagtaaagtgagga 46618618  T
Q  318 cagaaacaaatgatatatataa 339  Q
    | |||||| |||||||||||||    
T  46618617 ctgaaacatatgatatatataa 46618596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 31 - 268
Target Start/End: Original strand, 46643199 - 46643439
Alignment:
Q  31 ttttggttttgctcagccgaaatcctcctgtcaaagattgtaatatatcactcggtccaagagaagacaaagatttgcaagttggtgctgaaaacgtcc- 129  Q
    ||||||||||||||||| |||||||||||||||| ||||| | ||||||||| ||||||| |||||||| || |||||||||| |||||||||| | ||     
T  46643199 ttttggttttgctcagctgaaatcctcctgtcaaggattgaattatatcactaggtccaaaagaagacagagctttgcaagtttgtgctgaaaatgcccc 46643298  T
Q  130 --gactgttcttcccaggttcgacaccaagcctagtaaggtctcccttcttgttaccaatccctactgcttccacaagaacgtttattccaacagtagac 227  Q
      |||||||||||| |||||| ||  ||||||||||||||||||||||||  |||||||| |  ||||||||||||||||||   | |||| ||||||||    
T  46643299 aggactgttcttcctaggttccacgtcaagcctagtaaggtctcccttctccttaccaatactaactgcttccacaagaacgccaagtccagcagtagac 46643398  T
Q  228 ttcaaagaagatatgtatttttctagagaaattctgccctc 268  Q
    |||||| |||||||||||| |||||||||| |||| |||||    
T  46643399 ttcaaataagatatgtattcttctagagaagttcttccctc 46643439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 477 - 685
Target Start/End: Complemental strand, 46636657 - 46636449
Alignment:
Q  477 agttgaatacctgtaacaaagaatcttgagattcttcagatacatgaggaatcaagcgagataataattcatcttgtcttggtccagtaaaaagtttctt 576  Q
    |||||||||||||| ||| ||  ||||||||||||||||| |||||||||||||||||||| |||| ||||| ||| || ||||| | |||||| || |     
T  46636657 agttgaatacctgtgacagagcctcttgagattcttcagagacatgaggaatcaagcgagacaatagttcatgttgcctcggtccggcaaaaaggttatg 46636558  T
Q  577 cccaatcatacattttctcccctttaacttcatgcactccgaccatctacaatatccatcagttttgtaaaactttccatagtaaaatgaaagtatttcc 676  Q
     || ||||||||||||||||| |||  |||| |||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  46636557 tcctatcatacattttctcccttttttcttcctgcacttcgaccatctaagatatccatcagttttgtaaaactttccatagtaaaatgaaagcatttcc 46636458  T
Q  677 cccatccct 685  Q
    |||||||||    
T  46636457 cccatccct 46636449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 477 - 685
Target Start/End: Complemental strand, 46617959 - 46617751
Alignment:
Q  477 agttgaatacctgtaacaaagaatcttgagattcttcagatacatgaggaatcaagcgagataataattcatcttgtcttggtccagtaaaaagtttctt 576  Q
    |||||||||||||| ||| || || ||||||||||||||| |||||||||||||||||||| |||| ||||| ||| || ||||| | |||||| || |     
T  46617959 agttgaatacctgtgacagagcattttgagattcttcagagacatgaggaatcaagcgagacaatagttcatgttgcctcggtccggcaaaaaggttatg 46617860  T
Q  577 cccaatcatacattttctcccctttaacttcatgcactccgaccatctacaatatccatcagttttgtaaaactttccatagtaaaatgaaagtatttcc 676  Q
     || |||||||| |||||||| |||  |||| |||||| ||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  46617859 tcctatcatacactttctcccttttttcttcctgcacttcgaccatctatgatatccatcagttttgtaaaaccttccatagtaaaatgaaagtatttcc 46617760  T
Q  677 cccatccct 685  Q
    |||||||||    
T  46617759 cccatccct 46617751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 464 - 682
Target Start/End: Original strand, 46177017 - 46177235
Alignment:
Q  464 gatgggatggcacagttgaatacctgtaacaaagaatcttgagattcttcagatacatgaggaatcaagcgagataataattcatcttgtcttggtccag 563  Q
    |||| ||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||| |||||||||||| || | ||| | ||| || |||||||    
T  46177017 gatgagatggcacagttgaatacctgtaacaaagtatcttgcgattcttcagagacatgagtaatcaagcgagacaaaagttcttgttgcctcggtccag 46177116  T
Q  564 taaaaagtttcttcccaatcatacattttctcccctttaacttcatgcactccgaccatctacaatatccatcagttttgtaaaactttccatagtaaaa 663  Q
     |||||||||||  ||  |||||||||| | ||| |||  | || |||||| ||||||||||| |||||| |||||||||||||||| ||||||||||||    
T  46177117 caaaaagtttctgtcctgtcatacatttccccccttttttcctcctgcacttcgaccatctacgatatccttcagttttgtaaaactctccatagtaaaa 46177216  T
Q  664 tgaaagtatttcccccatc 682  Q
    ||| ||||| |||||||||    
T  46177217 tgagagtatctcccccatc 46177235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 158 - 330
Target Start/End: Original strand, 46176604 - 46176773
Alignment:
Q  158 cctagtaaggtctcccttcttgttaccaatccctactgcttccacaagaacgtttattccaacagtagacttcaaagaagatatgtatttttctagagaa 257  Q
    |||||||||||||  |||||  |||||||| ||||||||||||||||| ||    | ||||||| |||||||||||||||||||||||| ||| ||||||    
T  46176604 cctagtaaggtctttcttctccttaccaatacctactgcttccacaaggacaccaagtccaacaatagacttcaaagaagatatgtattcttcaagagaa 46176703  T
Q  258 attctgccctccataaacgactttgaaatctgtgtataacaaatacaagcaaagtgaggacagaaacaaatga 330  Q
     ||||| |||||| ||| ||||| || | ||| |||||| | |||||  |||||||||||| ||| |||||||    
T  46176704 gttctgtcctccacaaatgacttagacacctgagtataa-atataca--caaagtgaggactgaagcaaatga 46176773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 46176561 - 46176602
Alignment:
Q  60 gtcaaagattgtaatatatcactcggtccaagagaagacaaa 101  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  46176561 gtcaaagattgtattatttcactcggtccaagagaagacaaa 46176602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 144; Significance: 2e-75; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 15769601 - 15769882
Alignment:
Q  18 aagagttcattatttttggttttgctcagccgaaatcctcctgtcaaagattgtaatatatcactcggtccaagagaagacaaagatttgcaagttggtg 117  Q
    ||||| ||||||  ||||||||||||||||||||| ||||| ||||||||||||| |||||||||  |||||||||||||||||| ||||||||||||||    
T  15769601 aagagatcattacatttggttttgctcagccgaaaccctccagtcaaagattgtattatatcactaagtccaagagaagacaaagctttgcaagttggtg 15769700  T
Q  118 ctgaaaacg---tccgactgttcttcccaggttcgacaccaagcctagtaaggtctcccttcttgttaccaatccctactgcttccacaagaacgtttat 214  Q
    || ||||||   | |||||||||||| |||| |||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||    |     
T  15769701 ctaaaaacgccttacgactgttcttcacaggctcgacaccaagcctagtaaggtctcccttctccttaccaatacctactgcttccacaagaacaccaac 15769800  T
Q  215 tccaacagtagacttcaaagaagatatgtatttttctagagaaattctgccctccataaacgactttgaaatctgtgtataa 296  Q
    ||||||| |||||||||||||||||||||||| |||||||||| |||| ||||||| | | ||||| |||| ||| ||||||    
T  15769801 tccaacaatagacttcaaagaagatatgtattcttctagagaagttcttccctccacatatgacttagaaacctgagtataa 15769882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 475 - 683
Target Start/End: Original strand, 15770075 - 15770283
Alignment:
Q  475 acagttgaatacctgtaacaaagaatcttgagattcttcagatacatgaggaatcaagcgagataataattcatcttgtcttggtccagtaaaaagtttc 574  Q
    |||||||||||||||| ||| || |||||| ||||||||||||||||||| |||||||||||| || | ||||| ||| || |||||| |||||||||||    
T  15770075 acagttgaatacctgtgacagagtatcttgcgattcttcagatacatgagtaatcaagcgagacaaaagttcatgttgcctcggtccactaaaaagtttc 15770174  T
Q  575 ttcccaatcatacattttctcccctttaacttcatgcactccgaccatctacaatatccatcagttttgtaaaactttccatagtaaaatgaaagtattt 674  Q
    |  || ||||||| ||| | |||||||   ||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  15770175 tgtcctatcatacgtttcccccccttttttttcctgcactctgaccatctacgatatccatcagttttgtaaaactttccatagtaaaatgagagtattt 15770274  T
Q  675 cccccatcc 683  Q
    |||||||||    
T  15770275 cccccatcc 15770283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 539
Target Start/End: Original strand, 18376224 - 18376257
Alignment:
Q  506 gattcttcagatacatgaggaatcaagcgagata 539  Q
    |||||||| |||||||||||||||||||||||||    
T  18376224 gattcttcggatacatgaggaatcaagcgagata 18376257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University