View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14406_low_10 (Length: 397)
Name: NF14406_low_10
Description: NF14406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14406_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 358
Target Start/End: Complemental strand, 15054040 - 15053703
Alignment:
| Q |
18 |
agggttttggccaagttctcttgtaagttgtttcttgaatctatttcaatatttggtagatatagaatgaagatttaatgcagattcaagcctagcatat |
117 |
Q |
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| T |
15054040 |
agggttttggccaagttctcttgtaagttgtttcttgaatctatttcaat--ttggtagatatagaatgaagatttaatgcagattcaagcctagcatat |
15053943 |
T |
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| Q |
118 |
gaatacatacatgcaaagttttgatgaatatagtgctgtgctgccaaaggaatatacttcagcaagaaaggtggcgagcataatcaaatgtatgaaaacc |
217 |
Q |
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| T |
15053942 |
gaatgcatacatgcaaagttttgatgaatatagtgctgtgttgccaaaggaatatacttcagcaagaaaggtggcgagcataatcaaatgtatgaaaacc |
15053843 |
T |
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| Q |
218 |
acttaaatcggaaattcaacaacccctttagatatatttacacaaaatgattttaaccaattgatgttgtttgaatgatttggaaccaaaattgcttata |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
15053842 |
acttaaatcggaaattcaacaacccctttagatatatttacacaaaatgattttaaccaattgatgttttttgaatga-ttggaaccaaaattgcttata |
15053744 |
T |
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| Q |
318 |
tagtagaaaccaatagtagnnnnnnncacaatccaagagtt |
358 |
Q |
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||||||||||||||||||| ||||||||||||||| |
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| T |
15053743 |
tagtagaaaccaatagtagaaaaaagcacaatccaagagtt |
15053703 |
T |
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