View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14406_low_11 (Length: 390)

Name: NF14406_low_11
Description: NF14406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14406_low_11
NF14406_low_11
[»] chr7 (16 HSPs)
chr7 (4-375)||(22840661-22841033)
chr7 (16-287)||(22805924-22806200)
chr7 (49-173)||(22810292-22810417)
chr7 (4-178)||(22886106-22886273)
chr7 (16-279)||(22842788-22843056)
chr7 (16-77)||(22831646-22831707)
chr7 (17-157)||(22841253-22841393)
chr7 (213-293)||(22841468-22841546)
chr7 (90-171)||(22873811-22873892)
chr7 (16-156)||(22894572-22894712)
chr7 (240-292)||(22859206-22859258)
chr7 (239-293)||(22894801-22894855)
chr7 (4-63)||(22815632-22815695)
chr7 (330-376)||(22873626-22873672)
chr7 (330-375)||(22876396-22876441)
chr7 (335-375)||(22885980-22886020)
[»] chr1 (2 HSPs)
chr1 (29-154)||(21149975-21150101)
chr1 (206-291)||(21149819-21149902)


Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 4 - 375
Target Start/End: Original strand, 22840661 - 22841033
Alignment:
Q  4 aatttcatgtcgaatttgggtcctactaagaaatgtcctggaacctagctacgaattatttctgaaagaaacatttcatgaccaggttactaaatttgcc 103  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22840661 aatttcatgtctaatttgggtcctactaagaaatgtcctggaacctagctacgaattatttctgaaagaaacatttcatgaccaggttactaaatttgcc 22840760  T
Q  104 tttatcatctgagtccaactaagaaatgtctcatttagtttagtaaaaatgaatgtgtcacacatttgaaccacannnnnnnnnn-ccaactgtagaagc 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||    
T  22840761 tttatcatctgagtccaactaagaaatgtctcatttagtttagtaaaaatgaatgtgtcacacatttgaaccacatttttttttttccaactgtagaagc 22840860  T
Q  203 ggatgaacgtttttcaatgtttacatattttaaatatttgatgcaaaaatgaatatatgaaattaaaacatcaatgttttctaatttcttctgtaccatt 302  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22840861 ggatgaacgtttttcaatatttacatattttaaatgtttgatgcaaaaatgaatatatgaaattaaaacatcaatgttttctaatttcttctgtaccatt 22840960  T
Q  303 ggtgagttttagtctgctagttgagtttaacaagataaaacaacatgaacacaagtccaaggaacatgattat 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22840961 ggtgagttttagtctgctagttgagtttaacaagataaaacaacatgaacacaagtccaaggaacatgattat 22841033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 16 - 287
Target Start/End: Original strand, 22805924 - 22806200
Alignment:
Q  16 aatttgggtcctactaagaaatgtcctggaaccta-----gctacgaattatttctgaaagaaacatttcatgaccaggttactaaatttgcctttatca 110  Q
    ||||||||||||| |||||||||||||||||| ||     ||||||||| |||||| ||||||||||  ||||||  |||||||||| ||||||||||||    
T  22805924 aatttgggtcctagtaagaaatgtcctggaacataacttagctacgaatcatttctaaaagaaacatcacatgacatggttactaaaattgcctttatca 22806023  T
Q  111 tctg--agtccaactaagaaatgtctcatttagtttagtaaaaatgaatgtgtcacacatttgaaccacannnnnnnnnnccaactgtagaagcggatga 208  Q
    ||||  ||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||          |||| ||||| || || | |    
T  22806024 tctgtgagtcctactaagaaatatctcatttagtttagtaaaaatgaatgtgttacacatttgaaccacaaattttctttccaattgtagtagtgggtaa 22806123  T
Q  209 acgtttttcaatgtttacatattttaaatatttgatgcaaaaatgaatatatgaaattaaaacatcaatgttttctaat 287  Q
    | |||||||||||||||||||  |||| | |||||||| ||| ||||||| |||||| || |||||| |||| ||||||    
T  22806124 atgtttttcaatgtttacata--ttaagtgtttgatgctaaattgaatatgtgaaatcaagacatcagtgttgtctaat 22806200  T

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Target: chr7; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 49 - 173
Target Start/End: Original strand, 22810292 - 22810417
Alignment:
Q  49 tagctacgaattatttctgaaagaaacatttcatgaccaggttactaaa-tttgcctttatcatctgagtccaactaagaaatgtctcatttagtttagt 147  Q
    ||||||||||||||| || ||||||||||  ||||||  |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  22810292 tagctacgaattattacttaaagaaacatcacatgacatggttactaaaattttcctttatcatctgagtccaactaagaaatgtctcatttagtttagt 22810391  T
Q  148 aaaaatgaatgtgtcacacatttgaa 173  Q
    |||||||||||||| |||||||||||    
T  22810392 aaaaatgaatgtgttacacatttgaa 22810417  T

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Target: chr7; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 4 - 178
Target Start/End: Original strand, 22886106 - 22886273
Alignment:
Q  4 aatttcatgtcgaatttgggtcctactaagaaatgtcctggaacctagctacgaattatttctgaaagaaacatttcatgaccaggttactaaatttgcc 103  Q
    |||| |||||| |||| ||||||||||||||||| |||| |||||||||||||||||||| || ||||||||||  |||     |||||||||| |||||    
T  22886106 aattgcatgtctaattcgggtcctactaagaaatttcctagaacctagctacgaattattactaaaagaaacatcacat-----ggttactaaaattgcc 22886200  T
Q  104 tttatcatctgagtccaactaagaaatgtctcatttagtttagtaaaaatgaatgtgtcacacatttgaaccaca 178  Q
     |||||||||| |||| ||||||||||||||||||||||||||| || | |||||||| | ||||||||| ||||    
T  22886201 -ttatcatctgggtcctactaagaaatgtctcatttagtttagtgaaga-gaatgtgttatacatttgaatcaca 22886273  T

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Target: chr7; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 279
Target Start/End: Original strand, 22842788 - 22843056
Alignment:
Q  16 aatttgggtcctactaagaaatgtcctggaaccta-----gctacgaattatttctgaaagaaacatttcatgaccaggttactaaatttgcctttatca 110  Q
    |||||||||||||||||||||||||||||||||||     ||||||||||||| || ||  ||| |   ||| |   |||||||||| ||||||||||||    
T  22842788 aatttgggtcctactaagaaatgtcctggaacctaactcagctacgaattattactaaataaaagaaa-catcaaatggttactaaaattgcctttatca 22842886  T
Q  111 tct-gagtccaactaagaaatgtctcatttagtttagt-aaaaatgaatgtgtcacacatttgaaccacannnnnnnnnnccaactgtagaagcggatga 208  Q
    ||| |||||  ||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||          |||||||||| || || | |    
T  22842887 tcttgagtcatactaagaaacgtctcatttagtttagtgaaaaatgaatgtgttacacatttgaaccacaaattttctttccaactgtagtagtgggtaa 22842986  T
Q  209 acg-tttttcaatgtttacatattttaaatatttgatgcaaaaatgaatatatgaaattaaaacatcaatgt 279  Q
    | | ||||||||| ||||||||  |||| | |||||||| ||| ||||||| |||||| |||||||| ||||    
T  22842987 atgttttttcaatttttacata--ttaagtgtttgatgctaaattgaatatgtgaaatcaaaacatctatgt 22843056  T

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Target: chr7; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 22831646 - 22831707
Alignment:
Q  16 aatttgggtcctactaagaaatgtcctggaacctagctacgaattatttctgaaagaaacat 77  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22831646 aatttgggacctactaagaaatgtcctggaacctagctacgaattattactgaaagaaacat 22831707  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 22841253 - 22841393
Alignment:
Q  17 atttgggtcctactaagaaatgtcctggaaccta-----gctacgaattatttctgaaagaaacatttcatgaccaggttactaaatttgcctttatcat 111  Q
    ||||||||||||||||||||||||||||||||||     |||| |||||||  |  ||||||||||   |||     ||||||||  |||| | | ||||    
T  22841253 atttgggtcctactaagaaatgtcctggaacctaacttagctatgaattatcaccaaaagaaacatcaaatg-----gttactaatattgcgtatctcat 22841347  T
Q  112 ctgagtccaactaagaaatgtctcatttagtttagtaaaaatgaat 157  Q
     || |||| |||||||||||||||||||||||||||||||||||||    
T  22841348 ttgggtcctactaagaaatgtctcatttagtttagtaaaaatgaat 22841393  T

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Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 293
Target Start/End: Original strand, 22841468 - 22841546
Alignment:
Q  213 ttttcaatgtttacatattttaaatatttgatgcaaaaatgaatatatgaaattaaaacatcaatgttttctaatttcttc 293  Q
    |||||||||||||| ||||   ||| |||||||| ||| ||||||| ||||||||||||||||||||  ||||||||||||    
T  22841468 ttttcaatgtttacgtattg--aatgtttgatgctaaattgaatatgtgaaattaaaacatcaatgtcgtctaatttcttc 22841546  T

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Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 22873811 - 22873892
Alignment:
Q  90 ttactaaatttgcctttatcatctgagtccaactaagaaatgtctcatttagtttagtaaaaatgaatgtgtcacacatttg 171  Q
    |||||||| |||| ||| |||| || |||| |||||||||||||||||||||| || | |||||||||| || |||||||||    
T  22873811 ttactaaaattgcatttctcatttgggtcctactaagaaatgtctcatttagtatactgaaaatgaatgggttacacatttg 22873892  T

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Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 156
Target Start/End: Original strand, 22894572 - 22894712
Alignment:
Q  16 aatttgggtcctactaagaaatgtcctggaaccta-----gctacgaattatttctgaaagaaacatttcatgaccaggttactaaatttgcctttatca 110  Q
    ||||||||||||||||||||||||| |||||||||     |||| |||||||  |  ||||||||||   |||     ||||||||| | || | | |||    
T  22894572 aatttgggtcctactaagaaatgtcttggaacctaacttagctatgaattatcaccaaaagaaacatcaaatg-----gttactaaaatcgcgtatctca 22894666  T
Q  111 tctgagtccaactaagaaatgtctcatttagtttagtaaaaatgaa 156  Q
    | || |||| ||||||||||||||||||||||||||||||||||||    
T  22894667 tttgggtcctactaagaaatgtctcatttagtttagtaaaaatgaa 22894712  T

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Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 22859206 - 22859258
Alignment:
Q  240 ttgatgcaaaaatgaatatatgaaattaaaacatcaatgttttctaatttctt 292  Q
    ||||||||||| ||||||| |||||||||||||| |||||| |||||||||||    
T  22859206 ttgatgcaaaattgaatatgtgaaattaaaacattaatgttgtctaatttctt 22859258  T

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Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 22894801 - 22894855
Alignment:
Q  239 tttgatgcaaaaatgaatatatgaaattaaaacatcaatgttttctaatttcttc 293  Q
    |||||||| ||| ||||||| ||||||||||||||||||||  ||||||||||||    
T  22894801 tttgatgctaaattgaatatgtgaaattaaaacatcaatgtcgtctaatttcttc 22894855  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 22815632 - 22815695
Alignment:
Q  4 aatttcatgtcgaatttgggtccta----ctaagaaatgtcctggaacctagctacgaattatt 63  Q
    |||| |||||| |||||||||||||    ||||||||||||||||||| |||||| ||||||||    
T  22815632 aattgcatgtctaatttgggtcctaggtactaagaaatgtcctggaacttagctaggaattatt 22815695  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 330 - 376
Target Start/End: Original strand, 22873626 - 22873672
Alignment:
Q  330 taacaagataaaacaacatgaacacaagtccaaggaacatgattatg 376  Q
    ||||||||||||||||||||| |||||| |  |||||||||||||||    
T  22873626 taacaagataaaacaacatgagcacaagcctgaggaacatgattatg 22873672  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 375
Target Start/End: Original strand, 22876396 - 22876441
Alignment:
Q  330 taacaagataaaacaacatgaacacaagtccaaggaacatgattat 375  Q
    |||||||||||||||||||||||||||| |  | ||||||||||||    
T  22876396 taacaagataaaacaacatgaacacaagcctgaagaacatgattat 22876441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 335 - 375
Target Start/End: Original strand, 22885980 - 22886020
Alignment:
Q  335 agataaaacaacatgaacacaagtccaaggaacatgattat 375  Q
    ||||||| |||||||||||||||||  ||||||||||||||    
T  22885980 agataaagcaacatgaacacaagtctgaggaacatgattat 22886020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 29 - 154
Target Start/End: Complemental strand, 21150101 - 21149975
Alignment:
Q  29 ctaagaaatgtcctggaacctagctacgaattatttctgaaagaaacatttcatgaccaggttactaaatttgcctttatcatctgagtccaactaagaa 128  Q
    ||||||||||||| ||||||||||||||||||||| || ||||||||||  ||||||  |||||||||| ||| |||||||||  |||||| ||||||||    
T  21150101 ctaagaaatgtccgggaacctagctacgaattattactaaaagaaacatcacatgacatggttactaaaattgtctttatcattcgagtcctactaagaa 21150002  T
Q  129 a-tgtctcatttagtttagtaaaaatg 154  Q
    | |||||||||||||||||||||||||    
T  21150001 attgtctcatttagtttagtaaaaatg 21149975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 291
Target Start/End: Complemental strand, 21149902 - 21149819
Alignment:
Q  206 tgaacgtttttcaatgtttacatattttaaatatttgatgcaaaaatgaatatatgaaattaaaacatcaatgttttctaatttct 291  Q
    |||| |||||||||||||||| | ||  || | |||||||| ||| ||||||| ||||||||||||||||||||  ||||||||||    
T  21149902 tgaatgtttttcaatgtttacgtgtt--aagtgtttgatgctaaattgaatatgtgaaattaaaacatcaatgtcgtctaatttct 21149819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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