View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14406_low_13 (Length: 365)
Name: NF14406_low_13
Description: NF14406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14406_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 33 - 347
Target Start/End: Original strand, 39299908 - 39300222
Alignment:
| Q |
33 |
agaacttcccatgcctgtcataccccggtcaattggataaagctccaatggtacaaaaatcttgttcatacgtacacaaggattctgtaaatgacttgcc |
132 |
Q |
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| T |
39299908 |
agaacttcccatgcctgtcataccccggtcaattggataaagctccaatggtacaaaaatcttgttcatacgtacacaaggattctgtaaatgacttgcc |
39300007 |
T |
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| Q |
133 |
aatcatgagagaatatttgatgggacatgcactgaaaaagggatgtgcccaaatcttaaaattgaaatgcttataaagggttaaaataaaatgaaatgac |
232 |
Q |
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| T |
39300008 |
aatcatgagagaatatttgatgggacatgcactgaaaaagggatgtgcccaaatcttaaaattgaaatgcttataaagggttaaaataaaatgaaatgac |
39300107 |
T |
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| Q |
233 |
ttgccaatcacgagaatattgattttcttcatttctgcctaaagatacttgttcacattttcttaaataaaataaaattttacatggacttcaaaatttg |
332 |
Q |
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| T |
39300108 |
ttgccagtcacgagaatattgattttcttcatttctgcctaaagatacttgttcacattttcttaaataaaataaaattttacatggacttcaaaatttg |
39300207 |
T |
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| Q |
333 |
tatatacctactatg |
347 |
Q |
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| T |
39300208 |
tatatacctactatg |
39300222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 39262312 - 39262343
Alignment:
| Q |
1 |
acaagttgagtgagcaagaccgatacaagctt |
32 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
39262312 |
acaagttgagtgagcaagaccgatacaagctt |
39262343 |
T |
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