View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14406_low_18 (Length: 340)
Name: NF14406_low_18
Description: NF14406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14406_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 7278923 - 7279074
Alignment:
| Q |
1 |
gacccaccatttgaatttgatcagcaaattcttgcagaactatagcccttttgataatcgactttctcaagtccctaagagcagaacaatggaagactct |
100 |
Q |
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||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
7278923 |
gacccaccatttgaatttgatcaacaaattcttgaagaacaatagcccttttgataatcgactttctcaagtccctaagagcagaacaatgaaatactct |
7279022 |
T |
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| Q |
101 |
aacagaatccaacctaagaagcaaattcatgattgtttcagcgatccttatc |
152 |
Q |
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| T |
7279023 |
aacagaatccaacctaagaagcaaattcataattgtttcagcgatccttatc |
7279074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 7374916 - 7374765
Alignment:
| Q |
1 |
gacccaccatttgaatttgatcagcaaattcttgcagaactatagcccttttgataatcgactttctcaagtccctaagagcagaacaatggaagactct |
100 |
Q |
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||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
7374916 |
gacccaccatttgaatttgatcaacaaattcttgaagaacaatagcccttttgataatcgactttctcaagtccctaagagcagaacaatgaaatactct |
7374817 |
T |
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| Q |
101 |
aacagaatccaacctaagaagcaaattcatgattgtttcagcgatccttatc |
152 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7374816 |
aacagaatccaacctaagaagcaaattcataattgtttcagcgatccttatc |
7374765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 221 - 324
Target Start/End: Original strand, 7279143 - 7279246
Alignment:
| Q |
221 |
caactccactttcatcttcaaaatcttgttcaaactcgtcctcacaagaaaccctcttgcaaccttctcaatcttcgttgctgaatcggctctgtttctc |
320 |
Q |
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||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
7279143 |
caactccactttcatcttcaacatcttgttcaaactcttcctcacaagaaaccctcttgcaaccttctcaatcttcgttgctgaattggctttgtttctc |
7279242 |
T |
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| Q |
321 |
tctg |
324 |
Q |
| |
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|||| |
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| T |
7279243 |
tctg |
7279246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 221 - 324
Target Start/End: Complemental strand, 7374696 - 7374593
Alignment:
| Q |
221 |
caactccactttcatcttcaaaatcttgttcaaactcgtcctcacaagaaaccctcttgcaaccttctcaatcttcgttgctgaatcggctctgtttctc |
320 |
Q |
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|||||| || ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
7374696 |
caactctaccttcatcttcaacatcttgttcaaactcttcctcacaagaaaccctcttgcaaccttctcaatcttcgttgctgaattggctttgtttctc |
7374597 |
T |
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| Q |
321 |
tctg |
324 |
Q |
| |
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|||| |
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| T |
7374596 |
tctg |
7374593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 224 - 324
Target Start/End: Complemental strand, 5848103 - 5848003
Alignment:
| Q |
224 |
ctccactttcatcttcaaaatcttgttcaaactcgtcctcacaagaaaccctcttgcaaccttctcaatcttcgttgctgaatcggctctgtttctctct |
323 |
Q |
| |
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|||||| || |||||||| ||||| ||||||||| ||||||||||||| |||||||||| ||||||||||||| ||||||| |||||||||||||||||| |
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| T |
5848103 |
ctccaccttgatcttcaacatcttcttcaaactcttcctcacaagaaaacctcttgcaaacttctcaatcttcattgctgagtcggctctgtttctctct |
5848004 |
T |
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| Q |
324 |
g |
324 |
Q |
| |
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| |
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|
| T |
5848003 |
g |
5848003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 5848215 - 5848163
Alignment:
| Q |
100 |
taacagaatccaacctaagaagcaaattcatgattgtttcagcgatccttatc |
152 |
Q |
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|||||||||||||||||||||||||||||||||| |||| || |||||||||| |
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| T |
5848215 |
taacagaatccaacctaagaagcaaattcatgatggttttagtgatccttatc |
5848163 |
T |
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