View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14406_low_19 (Length: 316)
Name: NF14406_low_19
Description: NF14406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14406_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 10 - 300
Target Start/End: Original strand, 30053373 - 30053663
Alignment:
| Q |
10 |
agatgaagagtattatggtttaagggaactaatggatccagtggtgagaaacacagccaacctgataggatttggaaggttcttagagttggcaatgcaa |
109 |
Q |
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| T |
30053373 |
agatgaagagtattatggtttaagggaactaatggatccagtggtgagaaacacagccaacctgataggatttggaaggttcttagagttggcaatgcaa |
30053472 |
T |
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| Q |
110 |
tgcgttgaggaattggcttcagaccgaccaacaatgagtgaagttgtgaaagcgttagaaaccatattacataacgatgggatgattacaaattctactt |
209 |
Q |
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| T |
30053473 |
tgcgttgagggattggcttcagaccgaccaacaatgagtgaagttgtgaaagccttagaaaccatattacataacgatgggatgattacaaattctactt |
30053572 |
T |
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| Q |
210 |
cagcttcttcatctgccgctaattttgaagtttctaaaggtgctgcaacaagacatccttacattgatactctttttacaaagaaggatga |
300 |
Q |
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| T |
30053573 |
cagcttcttcatctgccgctaattttgaagtttctaaaggtgctgcagcaagacatccttacattgatactctttttacaaagaaggatga |
30053663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 298
Target Start/End: Original strand, 30037336 - 30037623
Alignment:
| Q |
11 |
gatgaagagtattatggtttaagggaactaatggatccagtggtgagaaacacagccaacctgataggatttggaaggttcttagagttggcaatgcaat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30037336 |
gatgaagagtattatggtttaagggaactaatggatccagtggtgagaaacacagccaacctgataggatttggaaggttcttagagttggcaatgcaat |
30037435 |
T |
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| Q |
111 |
gcgttgaggaattggcttcagaccgaccaacaatgagtgaagttgtgaaagcgttagaaaccatattacataacgatgggatgattacaaattctacttc |
210 |
Q |
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| T |
30037436 |
gtgttgaggaattggcttcagaccgaccaacaatgagtgaagttgtgaaagcgttagaaaccatattacaaaatgatggaattaatacaaattccacttc |
30037535 |
T |
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| Q |
211 |
agcttcttcatctgccgctaattttgaagtttctaaaggtgctgcaacaagacatccttacattgatactctttttacaaagaaggat |
298 |
Q |
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|||||| ||||||||| || | ||| | | |||||| |||||||||| ||||||||||| ||||||| | |||||| ||||||||| |
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| T |
30037536 |
agcttcatcatctgccactgactttaatgcttctaagggtgctgcaatgagacatccttatattgataatacttttactaagaaggat |
30037623 |
T |
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