View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14406_low_2 (Length: 640)
Name: NF14406_low_2
Description: NF14406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14406_low_2 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 605; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 19 - 635
Target Start/End: Original strand, 39838993 - 39839609
Alignment:
| Q |
19 |
aatggacctgtgatcataggtgcaggtccatctggtcttgcaacggcagcatgtcttagagaacaaggagtacccttcgttgttctcgaaagagctgatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39838993 |
aatggacctgtgatcataggtgcaggtccatctggtcttgcaacggcagcatgtcttagagaacaaggggtacccttcgttgttctcgaaagagctgatt |
39839092 |
T |
|
| Q |
119 |
gcatagcatcactatggcaaaaaagagcctacgacagattgaaacttcaccttccaaaacaattctgtcaactacctaaccttccaatgcctgaagattt |
218 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839093 |
gcatagcatcactatggcaaaaaagaacctacgacagattgaaacttcaccttccaaaacaattctgtcaactacctaaccttccaatgcctgaagattt |
39839192 |
T |
|
| Q |
219 |
ccctgaatacccttcaaagaaacaattcataagctaccttgaaaactatgctaacaaatttgaaatcaacccgcaattcaacgagtgtgttcaatctgct |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839193 |
ccctgaatacccttcaaagaaacaattcataagctaccttgaaaactatgctaacaaatttgaaatcaacccgcaattcaacgagtgtgttcaatctgct |
39839292 |
T |
|
| Q |
319 |
aagtatgatgaaaccagtggattgtggagggtcaagacaaatgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39839293 |
aagtatgatgaaaccagtggattgtggagggtcaagacaaatgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtg |
39839392 |
T |
|
| Q |
419 |
ttactcctgaaattgaaggactttctgaattcaaaggtgaagttgtttatgcttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgt |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39839393 |
ttactcctgaaattgaaggactttctgaattcaaaggtgaagttgtttatgcttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgt |
39839492 |
T |
|
| Q |
519 |
tgttggatgtggaaattctggaatggaactctcacttgatcttagcaatcatcatgctttaccttccatggttgttcgtagctcggtaggttccttttat |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
39839493 |
tgttggatgtggaaattctggaatggaactctcacttgatcttagcaatcatcatgctttaccttccatggttgttcgtagctcggtaagttccttttat |
39839592 |
T |
|
| Q |
619 |
gtgtctggtatctgtgt |
635 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
39839593 |
gtgtctggtatctgtgt |
39839609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 243 - 635
Target Start/End: Complemental strand, 39733741 - 39733349
Alignment:
| Q |
243 |
attcataagctaccttgaaaactatgctaacaaatttgaaatcaacccgcaattcaacgagtgtgttcaatctgctaagtatgatgaaaccagtggattg |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39733741 |
attcataagctaccttgaaaactatgctaacaaatttgaaatcaacccgcaattcaacgagtgtgttcaatctgctaagtatgatgaaaccagtggattg |
39733642 |
T |
|
| Q |
343 |
tggagggtcaagacaaatgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttactcctgaaattgaaggacttt |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39733641 |
tggagggtcaagacaaatgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttactcctgaaattgaaggacttt |
39733542 |
T |
|
| Q |
443 |
ctgaattcaaaggtgaagttgtttatgcttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgttgttggatgtggaaattctggaat |
542 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39733541 |
ctgaattcaaaggtgaagttgtttatgcttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgttgttggatgtggaaattctggaat |
39733442 |
T |
|
| Q |
543 |
ggaactctcacttgatcttagcaatcatcatgctttaccttccatggttgttcgtagctcggtaggttccttttatgtgtctggtatctgtgt |
635 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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|
| T |
39733441 |
ggaactctcacttgatcttagcaatcatcatgctttaccttccatggttgttcgtagctcggtaagttccttttatgtgtctggtatatgtgt |
39733349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 154 - 294
Target Start/End: Original strand, 31290041 - 31290181
Alignment:
| Q |
154 |
agattgaaacttcaccttccaaaacaattctgtcaactacctaaccttccaatgcctgaagatttccctgaatacccttcaaagaaacaattcataagct |
253 |
Q |
| |
|
||||| |||||||||||||| |||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| || |
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|
| T |
31290041 |
agattcaaacttcaccttcctaaaccattatgtcaactacctaaccttccaatgcttgaagatttccctgaatacccttcaaagaaacagttcataaact |
31290140 |
T |
|
| Q |
254 |
accttgaaaactatgctaacaaatttgaaatcaacccgcaa |
294 |
Q |
| |
|
| |||| ||||||||||||||||||||||||| ||||||| |
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|
| T |
31290141 |
atcttgtaaactatgctaacaaatttgaaatctccccgcaa |
31290181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 167 - 299
Target Start/End: Complemental strand, 31290748 - 31290616
Alignment:
| Q |
167 |
accttccaaaacaattctgtcaactacctaaccttccaatgcctgaagatttccctgaatacccttcaaagaaacaattcataagctaccttgaaaacta |
266 |
Q |
| |
|
||||||| |||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
31290748 |
accttcctaaacaattgtgtcaactacttaaccttccaatgcctgaagatttccatgaatacccttcaaagaaacagttcataaactaccttgaaaacta |
31290649 |
T |
|
| Q |
267 |
tgctaacaaatttgaaatcaacccgcaattcaa |
299 |
Q |
| |
|
| | ||||||||||||||| |||| |||||||| |
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|
| T |
31290648 |
tccgaacaaatttgaaatcgacccacaattcaa |
31290616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 31290817 - 31290746
Alignment:
| Q |
21 |
tggacctgtgatcataggtgcaggtccatctggtcttgcaacggcagcatgtcttagagaacaaggagtacc |
92 |
Q |
| |
|
||||| |||||||||| ||||| ||||||||| || || ||| || ||||||||||||||||||| ||||| |
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|
| T |
31290817 |
tggacgtgtgatcatatgtgcaagtccatctgacctagcgacgacaacatgtcttagagaacaaggggtacc |
31290746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 365 - 397
Target Start/End: Original strand, 31290472 - 31290504
Alignment:
| Q |
365 |
ttgagtatatttgtaggtggcttgttgttgcta |
397 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
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|
| T |
31290472 |
ttgagaatatttgtaggtggcttgttgttgcta |
31290504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 4e-92; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 35 - 606
Target Start/End: Complemental strand, 29858021 - 29857435
Alignment:
| Q |
35 |
taggtgcaggtccatctggtcttgcaacggcagcatgtcttagagaacaaggagtacccttcgttgttctcgaaagagctgattgcatagcatcactatg |
134 |
Q |
| |
|
|||| ||||| ||||| ||||| ||||| ||||||||||||| ||||||||||||||||| | ||||| |||||| | |||||||||| |||||||| |
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|
| T |
29858021 |
taggagcaggaccatcaggtctagcaacagcagcatgtcttaagcaacaaggagtacccttcatggttcttgaaagatcaaattgcatagcttcactatg |
29857922 |
T |
|
| Q |
135 |
gcaaaaaagagcctacgacagattgaaacttcaccttccaaaacaattctgtcaactacctaaccttccaatgcctgaagatttccctgaatacccttca |
234 |
Q |
| |
|
|||||||||| | || |||||||| ||||||||||| || |||||||||||||||||||||||| ||||| | || |||| || |||||||| || || |
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|
| T |
29857921 |
gcaaaaaagaacatatgacagattaaaacttcacctccctaaacaattctgtcaactacctaactttccattcccacaagaatttcctgaatatccaaca |
29857822 |
T |
|
| Q |
235 |
aagaaacaattcataagctaccttgaaaactatgctaacaaatttgaaatcaacccgcaattcaacgagtgtgttcaatctgctaagtatgatgaaacca |
334 |
Q |
| |
|
|||||||| ||||||| ||| |||||| ||| || || | |||||||||||||||| ||||||||||||||||||||||||||| |||||||| || | |
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|
| T |
29857821 |
aagaaacagttcataaactatcttgaatcctacgcgaaacactttgaaatcaacccgcgattcaacgagtgtgttcaatctgctaaatatgatgagacta |
29857722 |
T |
|
| Q |
335 |
gtggattgtggagggtcaagac------------aaatgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttac |
422 |
Q |
| |
|
||| |||||||| || |||| |||||||||||||||||||||||||| |||||| |||||||| || || ||||| ||||||||| |
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|
| T |
29857721 |
atgggttgtggagagttgagactgtttccaatggaaatgaagttgagtatatttgtaggtcgcttgtggttgctactggtgagaatgcagagtgtgttgt |
29857622 |
T |
|
| Q |
423 |
tcctgaaattgaagg---actttctgaattcaaaggtgaagttgtttatgcttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgtt |
519 |
Q |
| |
|
||| | |||||||| | | ||||||||| |||||| || || ||||||||||||| || ||||| ||| |||| ||| ||||||||| | ||| |
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|
| T |
29857621 |
gccttatattgaagggttaggtggtgaattcaagggtgaaattattcatgcttgtgattataaatcaggtgaaagttttagagggaagaaagttttggtt |
29857522 |
T |
|
| Q |
520 |
gttggatgtggaaattctggaatggaactctcacttgatcttagcaatcatcatgctttaccttccatggttgttcgtagctcggta |
606 |
Q |
| |
|
||||| ||||| ||||||||||||||||| || ||||||||| |||||||| |||| | |||||| || ||| |||||||||||||| |
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|
| T |
29857521 |
gttggttgtggtaattctggaatggaactttctcttgatctttgcaatcataatgcatcaccttctattgttcttcgtagctcggta |
29857435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 407
Target Start/End: Original strand, 17407974 - 17408021
Alignment:
| Q |
360 |
tgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
17407974 |
tgaagttgagtatatttgtaggtggcttgtggttgctaccggtgaaaa |
17408021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 502 - 561
Target Start/End: Original strand, 17408116 - 17408175
Alignment:
| Q |
502 |
ggaaagaaagttcttgttgttggatgtggaaattctggaatggaactctcacttgatctt |
561 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||| |||||| | || ||||||||| |
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|
| T |
17408116 |
ggaaaaaatgttcttgttgttggatgtggaaattctggcatggaagtttctcttgatctt |
17408175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 17407750 - 17407826
Alignment:
| Q |
160 |
aaacttcaccttccaaaacaattctgtcaactacctaaccttccaatgcctgaagatttccctgaatacccttcaaa |
236 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||||||| || ||||| | ||||| | |||||||||||||||||||| |
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|
| T |
17407750 |
aaacttcatcttcctaaacaattgtgtcaactacccaattttccattccctgatcacttccctgaatacccttcaaa |
17407826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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