View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14406_low_21 (Length: 290)
Name: NF14406_low_21
Description: NF14406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14406_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 99; Significance: 7e-49; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 76 - 223
Target Start/End: Complemental strand, 6101144 - 6100995
Alignment:
| Q |
76 |
gtttggaggtacatcgattttcaaaaggctggaattcagccaaaagtgaatggcattaaactcattttgacaactcgtttgaaacatgtgtgtcaacaaa |
175 |
Q |
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| T |
6101144 |
gtttggaggtacatcgattttcagaaagctggaattcagccaagaacgaatggcattaaactcattctgacaactcgtttgaaacacgtgtgtcaacaaa |
6101045 |
T |
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| Q |
176 |
tgga--ctgtatcagatcatatgctaccgattatgcctctcaatagctat |
223 |
Q |
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| T |
6101044 |
tggattttgtaccaaatcatatgctaccgattatgcctctcaatagctat |
6100995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 6234788 - 6234715
Alignment:
| Q |
106 |
ggaattcagccaaaagtgaatggcattaaactcattttgacaactcgtttgaaacatgtgtgtcaacaaatgga |
179 |
Q |
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| T |
6234788 |
ggaattcatccaaaagtgaatggcattaaagtgattttgacaactcggttgaaacatgtatgtcaccagatgga |
6234715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 76 - 185
Target Start/End: Complemental strand, 6089261 - 6089152
Alignment:
| Q |
76 |
gtttggaggtacatcgattttcaaaaggctggaattcagccaaaagtgaatggcattaaactcattttgacaactcgtttgaaacatgtgtgtcaacaaa |
175 |
Q |
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| T |
6089261 |
gtttggaaatacattgatttggaaaaggtgggaattcatacaaaggtgaatggtattaaagtaattctgacaactcgtttgaaacttgtgtgtcaacaga |
6089162 |
T |
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| Q |
176 |
tggactgtat |
185 |
Q |
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|||| ||||| |
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| T |
6089161 |
tggattgtat |
6089152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 6208370 - 6208297
Alignment:
| Q |
106 |
ggaattcagccaaaagtgaatggcattaaactcattttgacaactcgtttgaaacatgtgtgtcaacaaatgga |
179 |
Q |
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| T |
6208370 |
ggaattcatcaaaaagtgaatggcattaaagtgattttgacaactcggttgaaacatgtatgtcaccagatgga |
6208297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 6237669 - 6237596
Alignment:
| Q |
106 |
ggaattcagccaaaagtgaatggcattaaactcattttgacaactcgtttgaaacatgtgtgtcaacaaatgga |
179 |
Q |
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| T |
6237669 |
ggaattcatcaaaaagtgaatggcattaaagtgattttgacaactcggttgaaacatgtatgtcaccagatgga |
6237596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 6180787 - 6180714
Alignment:
| Q |
106 |
ggaattcagccaaaagtgaatggcattaaactcattttgacaactcgtttgaaacatgtgtgtcaacaaatgga |
179 |
Q |
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| T |
6180787 |
ggaattcatccaaaagtaaatggcattaaagtgattctaacaactcgtttgaaacatgtatgtcaccagatgga |
6180714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 6247608 - 6247535
Alignment:
| Q |
106 |
ggaattcagccaaaagtgaatggcattaaactcattttgacaactcgtttgaaacatgtgtgtcaacaaatgga |
179 |
Q |
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| T |
6247608 |
ggaattcatccaaaagtaaatggcattaaagtgattctaacaactcgtttgaaacatgtatgtcaccagatgga |
6247535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 6106402 - 6106344
Alignment:
| Q |
106 |
ggaattcagccaaaagtgaatggcattaaactcattttgacaactcgtttgaaacatgt |
164 |
Q |
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| T |
6106402 |
ggaattcatccaaaagtgaatggcattaaagtgattctaacaacacgtttgaaacatgt |
6106344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 6213221 - 6213163
Alignment:
| Q |
106 |
ggaattcagccaaaagtgaatggcattaaactcattttgacaactcgtttgaaacatgt |
164 |
Q |
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|||||||| ||| |||| |||||||||||| | |||||||||||||||||| ||||||| |
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| T |
6213221 |
ggaattcatccagaagtaaatggcattaaagtgattttgacaactcgtttggaacatgt |
6213163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 196
Target Start/End: Complemental strand, 6094628 - 6094506
Alignment:
| Q |
76 |
gtttggaggtacatcgattttcaaaaggctggaattcagccaaaagtgaatggcattaaactcattttgacaactcgtttgaaacatgtgtgtcaacaaa |
175 |
Q |
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||||||| ||||| ||||| ||||||| ||||||| | ||| ||||||| |||||| | ||| | |||||||||||||||||||||||||| | | |
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| T |
6094628 |
gtttggaaatacattgatttgcaaaaggtgggaattcctctaaatgtgaatgtaattaaagtgattctaacaactcgtttgaaacatgtgtgtcacgaga |
6094529 |
T |
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| Q |
176 |
tggactgtat--cagatcatatg |
196 |
Q |
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|||| ||||| ||||||||||| |
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| T |
6094528 |
tggattgtatgccagatcatatg |
6094506 |
T |
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