View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14406_low_26 (Length: 254)

Name: NF14406_low_26
Description: NF14406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14406_low_26
NF14406_low_26
[»] chr6 (2 HSPs)
chr6 (137-236)||(30706574-30706673)
chr6 (1-66)||(30706438-30706503)
[»] chr3 (2 HSPs)
chr3 (136-226)||(5231074-5231164)
chr3 (2-66)||(5230943-5231007)
[»] chr7 (2 HSPs)
chr7 (137-237)||(14736592-14736693)
chr7 (2-66)||(14736782-14736847)
[»] chr2 (2 HSPs)
chr2 (155-219)||(35657813-35657878)
chr2 (1-65)||(35657997-35658062)
[»] chr5 (2 HSPs)
chr5 (2-55)||(17589937-17589991)
chr5 (137-217)||(17590086-17590167)


Alignment Details
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 30706574 - 30706673
Alignment:
Q  137 cctcaaagccaaccagatcaagaacaaaccagagctgaaaacctctgagaaaagtaacaacttcgacatggcaacccaaaggaacaacaatgacgataga 236  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  30706574 cctcaaagccaaccagatcaagaacaaaccaaagctgaaaacctctgagaaaagtaacaacttcgacatggcaacccaaaggagcaacaaagacgataga 30706673  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 30706438 - 30706503
Alignment:
Q  1 ccataccctttcgggtttacaaaccaaaccatctcaaaaggtcacatctgcaaccacccaagccct 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30706438 ccataccctttcgggtttacaaaccaaaccatctcaaaaggtcacatctgcaaccacccaagccct 30706503  T

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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 136 - 226
Target Start/End: Original strand, 5231074 - 5231164
Alignment:
Q  136 acctcaaagccaaccagatcaagaacaaaccagagctgaaaacctctgagaaaagtaacaacttcgacatggcaacccaaaggaacaacaa 226  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||  ||| |||||||||||||| |||||||||| ||||||| ||||||    
T  5231074 acctcaaagccaaccagatcaataacaaaccaaagctgaaaaccttcgaggaaagtaacaacttccacatggcaactcaaaggagcaacaa 5231164  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 5230943 - 5231007
Alignment:
Q  2 cataccctttcgggtttacaaaccaaaccatctcaaaaggtcacatctgcaaccacccaagccct 66  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  5230943 cataccctttcgggtttacaaaccaaaccatcgcaaaagatcacatctgcaaccacccaagccct 5231007  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 14736693 - 14736592
Alignment:
Q  137 cctcaaagccaaccagatcaagaacaaaccagagctgaa-aacctctgagaaaagtaacaacttcgacatggcaacccaaaggaacaacaatgacgatag 235  Q
    ||||||| |||||| | ||| ||||||| ||||| |||| |||||||| | |||||||||||||||||||||||| |||||||| || ||| ||||| ||    
T  14736693 cctcaaatccaaccggttcaggaacaaaacagagttgaataacctctgtggaaagtaacaacttcgacatggcaatccaaaggagcaccaacgacgaaag 14736594  T
Q  236 aa 237  Q
    ||    
T  14736593 aa 14736592  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 14736847 - 14736782
Alignment:
Q  2 cataccctttcgggtttac-aaaccaaaccatctcaaaaggtcacatctgcaaccacccaagccct 66  Q
    |||| |||||||||||||| |||||||| |||| ||||||||| |||||||| || ||||||||||    
T  14736847 cataacctttcgggtttacaaaaccaaatcatcacaaaaggtctcatctgcagccccccaagccct 14736782  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 35657878 - 35657813
Alignment:
Q  155 caagaacaaaccagagctgaaaa-cctctgagaaaagtaacaacttcgacatggcaacccaaagga 219  Q
    ||||||| || |||||||||||| |||| ||| |||||||||||||||||| ||||||||||||||    
T  35657878 caagaactaagcagagctgaaaaacctccgaggaaagtaacaacttcgacaaggcaacccaaagga 35657813  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 35658062 - 35657997
Alignment:
Q  1 ccataccctttcgggtttacaaa-ccaaaccatctcaaaaggtcacatctgcaaccacccaagccc 65  Q
    ||||||||||||||||||||||| ||||||||||  |||||||| | |||| ||||||||||||||    
T  35658062 ccataccctttcgggtttacaaaaccaaaccatcgtaaaaggtcgcgtctgtaaccacccaagccc 35657997  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 17589937 - 17589991
Alignment:
Q  2 cataccctttcgggtttacaaa-ccaaaccatctcaaaaggtcacatctgcaacc 55  Q
    |||||||||||||||||||||| ||||| |||| ||||||||| |||||||||||    
T  17589937 cataccctttcgggtttacaaaaccaaatcatcgcaaaaggtctcatctgcaacc 17589991  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 217
Target Start/End: Original strand, 17590086 - 17590167
Alignment:
Q  137 cctcaaagccaaccagatcaagaacaaaccagagctgaa-aacctctgagaaaagtaacaacttcgacatggcaacccaaag 217  Q
    ||||||| |||||| | ||| |||||||  |||| |||| ||||| || | |||||||||||||||||||||||| ||||||    
T  17590086 cctcaaatccaaccggttcaggaacaaaatagagttgaataacctatgtggaaagtaacaacttcgacatggcaatccaaag 17590167  T

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