View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14406_low_28 (Length: 241)
Name: NF14406_low_28
Description: NF14406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14406_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 31338787 - 31339001
Alignment:
| Q |
10 |
aagaaaatggcggatatccacgagagcttttaaaacaaacacaaaaagtccaaggtaaaggagaaccactgggattttacatttcataatacacataatt |
109 |
Q |
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| T |
31338787 |
aagaatatggcggatatccacgagagcttttaaaacaaacacaaaaagtccaaggtaaaggagaaccactgggattttacatttcataatacacataatt |
31338886 |
T |
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| Q |
110 |
ctcaatcaagactttgaaaatcgataataatgaagcttgtcttgatgcctaatattcgagaaccattgggattttacactttaatcacgcatacaaaagt |
209 |
Q |
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| T |
31338887 |
ctcaatcaagactttgaaaatcgataataatgaagcttgtcttgatgcctaatattcgagaaccattgggattttacactttaatcacgcatacaaaagt |
31338986 |
T |
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| Q |
210 |
aaaaatatgatatat |
224 |
Q |
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| T |
31338987 |
aaaaatatgatatat |
31339001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 31306618 - 31306714
Alignment:
| Q |
10 |
aagaaaatggcggatatccacgagagcttttaaaacaaacacaaaaagtcc-aaggtaaaggagaaccactgggattttacatttcataatacacataat |
108 |
Q |
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| T |
31306618 |
aagaatatggtggatatccacaagagttttgaaaagaaa---aaaaattccgaaggtaaaggagaaccactgggattttactcttcatgatacacataat |
31306714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 31306871 - 31306924
Alignment:
| Q |
149 |
tcttgatgcctaatattcgagaaccattgggattttacactttaatcacgcata |
202 |
Q |
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| T |
31306871 |
tcttgatacctaatatttgaaaaccacttggattttacactttaatcatgcata |
31306924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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