View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14406_low_31 (Length: 237)
Name: NF14406_low_31
Description: NF14406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14406_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 33802976 - 33803197
Alignment:
| Q |
1 |
gaattagcctgacacaactcatcattcccagcaccagtagtagtggtgttaatttcatcgttgaatgacgaaacggaattagcattactactatttccta |
100 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33802976 |
gaattagcctgacacaactcatcattcctagcaccagtagtagtggtgttaatttcatcgttgaatgacgaaacggaattagcattactactatttccta |
33803075 |
T |
|
| Q |
101 |
caacatctccacttctttgataatcggattctacaacaggtgcaacctcaatttgtcctccaatagtcggatataaggaggatagtgaaatattatctct |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
33803076 |
caacatctccacttctttgataatcggattctacaacaggtgcaacttcaatttgtcctccaatagtcggatataaggaggataatgacatattatctct |
33803175 |
T |
|
| Q |
201 |
agccgagatggacgacacactt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
33803176 |
agccgagatggacgacacactt |
33803197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 33731597 - 33731818
Alignment:
| Q |
1 |
gaattagcctgacacaactcatcattcccagcaccagtagtagtggtgttaatttcatcgttgaatgacgaaacggaattagcattactactatttccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33731597 |
gaattagcctgacacaactcatcattcctagcaccagtagtagtggtgttaatttcatcgttgaatgacgaaacagaattagcattactactatttccta |
33731696 |
T |
|
| Q |
101 |
caacatctccacttctttgataatcggattctacaacaggtgcaacctcaatttgtcctccaatagtcggatataaggaggatagtgaaatattatctct |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||| ||||||||||| |
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| T |
33731697 |
caacatctccacttctttgataatcggattctacaacaggtgcaacttcaatttgtcctccaatagtcagatataaggaggataatgacatattatctct |
33731796 |
T |
|
| Q |
201 |
agccgagatggacgacacactt |
222 |
Q |
| |
|
|| ||||||||||||||||||| |
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|
| T |
33731797 |
agtcgagatggacgacacactt |
33731818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 6126119 - 6125996
Alignment:
| Q |
1 |
gaattagcctgacacaactcatcattcccagcaccagtagtagtggtgttaatttcatcgttgaatgacgaaacggaattagcattactactatttccta |
100 |
Q |
| |
|
|||||||| || ||||||||||||||| || |||| ||||| |||||||||||||||||||||||||||||| |||||| |||||||| |||||||| |
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|
| T |
6126119 |
gaattagcacgaaacaactcatcattcctagtaccaatagtaatggtgttaatttcatcgttgaatgacgaaatggaattcacattactattatttcctc |
6126020 |
T |
|
| Q |
101 |
caacatctccacttctttgataat |
124 |
Q |
| |
|
||||| | ||||||||||||||| |
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|
| T |
6126019 |
caacaaatgcacttctttgataat |
6125996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 6145538 - 6145414
Alignment:
| Q |
1 |
gaattagcctgacacaactcatcattcccagcaccagtagtagtggtgttaatttcatcgttgaatgacgaaacggaattagcattactactatttccta |
100 |
Q |
| |
|
|||||||| || ||||||||||||||| || |||| |||||||||||||| || |||||||||||||||||| |||||| |||||||| | |||||| |
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|
| T |
6145538 |
gaattagcacgaaacaactcatcattcctagtaccaatagtagtggtgttagttccatcgttgaatgacgaaatggaattcacattactattgtttcctg |
6145439 |
T |
|
| Q |
101 |
caacatctccacttctttgataatc |
125 |
Q |
| |
|
||||| ||||||||||| ||||||| |
|
|
| T |
6145438 |
caacaactccacttcttggataatc |
6145414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 6151945 - 6151818
Alignment:
| Q |
14 |
acaactcatcattcccagcaccagtagtagtggtgttaatttcatcgttgaatgacgaaacggaattagcattactactatttcctacaacatctccact |
113 |
Q |
| |
|
||||||||||||| | || |||||||| ||||| ||||||| ||||| ||||||| |||| |||||| |||||||||| |||||| ||||| ||||||| |
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|
| T |
6151945 |
acaactcatcatttctagtaccagtagcagtggggttaattccatcgctgaatgatgaaatggaattcacattactactgtttcctgcaacaactccact |
6151846 |
T |
|
| Q |
114 |
tctttgataatcggattctacaacaggt |
141 |
Q |
| |
|
||||||| |||| ||| || |||||||| |
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|
| T |
6151845 |
tctttgaaaatcagatcctgcaacaggt |
6151818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 28755565 - 28755514
Alignment:
| Q |
171 |
atataaggaggatagtgaaatattatctctagccgagatggacgacacactt |
222 |
Q |
| |
|
|||||||||||| | ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28755565 |
atataaggaggagaatgacatattatctctagccgagatggacgacacactt |
28755514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 28755573 - 28755637
Alignment:
| Q |
154 |
tgtcctccaatagtcggatataaggaggatagtgaaatattatctctagccgagatggacgacac |
218 |
Q |
| |
|
|||||||||||| | ||||||||| || | ||| ||||||||||||||||||||||||||||| |
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|
| T |
28755573 |
tgtcctccaatatcagaatataaggaagagaatgacatattatctctagccgagatggacgacac |
28755637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 32621632 - 32621665
Alignment:
| Q |
149 |
caatttgtcctccaatagtcggatataaggagga |
182 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
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|
| T |
32621632 |
caatttgtcctccaatagttggatataaggagga |
32621665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 6138412 - 6138376
Alignment:
| Q |
63 |
gaatgacgaaacggaattagcattactactatttcct |
99 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||| |
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|
| T |
6138412 |
gaatgatgaaatggaattagcattactactatttcct |
6138376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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