View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14406_low_4 (Length: 599)
Name: NF14406_low_4
Description: NF14406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14406_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 14 - 585
Target Start/End: Complemental strand, 34975187 - 34974616
Alignment:
| Q |
14 |
agagatatgagaaggtacacctgcaaaaataataaaaagatctcatgttactaggtaacttatggtttatggatatgttatggtacaattgctaactata |
113 |
Q |
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| T |
34975187 |
agagatatgagaaggtacacctgcaaaaataataaaaagatcccatgttactaggtaacttatggtttatggatatgttatggtacaattgctaactata |
34975088 |
T |
|
| Q |
114 |
aatgatattttgtgtgagtgacaggccataaggtatattgagtacgattcctcattcagtgatgaggagaaacagcaggccaaagcattgaaaatttcat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34975087 |
aatgatattttgtgtgagtgacaggccataaggtattttgagtacgattcctcattcagtgatgaggagaaacagcaggccaaagcattgaaaatttcat |
34974988 |
T |
|
| Q |
214 |
gcaatcttaatgacgcggcatgtaagttgaaactcaaggactacaaacaggcagagaagttgtgcacaaaggttagtttatgaaatttccttttctgctt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34974987 |
gcaatcttaatgacgcggcatgtaagttgaaactcaaggactacaaacaggcagagaagttgtgcacaaaggttagtttatgaaatttccttttctgctt |
34974888 |
T |
|
| Q |
314 |
atttttgttatatttctgtagttgaattcaaagggaaacagagtgaaaaccattgacttaagaggattttgttttaatctgtaggtgttagagcttgata |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34974887 |
atttttgttatatttctgtagttgaattcaaagggaaacagagtgaaaaccattgacttaagaggattttgttgtaatctgtaggtgttagagcttgata |
34974788 |
T |
|
| Q |
414 |
gtagaaacgtaaaagccctataccgaagggcacaagcatatattcatctcattgacttggatttggctgaaatggatattaagaaagcccttgaaattga |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34974787 |
gtagaaacgtaaaagccctataccgaagggcacaagcatatattcatctcattgacttggatttggctgaaatggatattaagaaagcccttgaaattga |
34974688 |
T |
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| Q |
514 |
tccagataaccggtatgcttttggtcttgtgaatgatccccatggtgtatatgcataaactatgtacctagt |
585 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34974687 |
tccagataaccggtatgcttttggtcttgtgaatgatccccatggtgtatatgcataaactatgtacctagt |
34974616 |
T |
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