View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14406_low_5 (Length: 534)

Name: NF14406_low_5
Description: NF14406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14406_low_5
NF14406_low_5
[»] chr3 (18 HSPs)
chr3 (105-534)||(6165794-6166235)
chr3 (241-530)||(6242356-6242655)
chr3 (117-249)||(6235001-6235133)
chr3 (241-479)||(6256263-6256507)
chr3 (147-234)||(6242195-6242282)
chr3 (428-534)||(6235271-6235377)
chr3 (13-99)||(13283009-13283095)
chr3 (98-180)||(6255817-6255899)
chr3 (14-99)||(6139004-6139091)
chr3 (14-96)||(6164321-6164403)
chr3 (14-82)||(6234110-6234178)
chr3 (14-77)||(6241896-6241959)
chr3 (166-249)||(6879541-6879624)
chr3 (17-75)||(6255127-6255185)
chr3 (183-247)||(6256186-6256249)
chr3 (305-343)||(6235154-6235192)
chr3 (45-77)||(6859282-6859314)
chr3 (37-77)||(7746936-7746976)
[»] scaffold0425 (1 HSPs)
scaffold0425 (114-249)||(14416-14553)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 105 - 534
Target Start/End: Original strand, 6165794 - 6166235
Alignment:
Q  105 ccaaaacgtcaagtatattttatttttaatatgccggtgctgaataataacagccaaaagaaatttgattaaatcacggttcaactatgattggaaaaca 204  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||  || ||||||||||| |||||||    
T  6165794 ccaaaacgacaagtatattttatttttaatatgccagtgctgaataataacagccacaagaaatttgattaaatcattgtccaactatgattagaaaaca 6165893  T
Q  205 ccaaatttcactgataacaaagtggcataactttca-------------------attttttatcacttctttctaacaataaaaagtaaaacttaaaat 285  Q
    |||||||||||||||||||||||||||| |||||||                   ||||||||||||||||||||||||||||||||||||||| |||||    
T  6165894 ccaaatttcactgataacaaagtggcatgactttcaattttttattttctataatattttttatcacttctttctaacaataaaaagtaaaactgaaaat 6165993  T
Q  286 cacagttaaaggtcaggtcatatccacaccttataattggtaaacacaagtaattctcacggcacttttttcaagtctcatgttttctgggaacctaaaa 385  Q
    ||||||||||| | ||||||||||| |||||||||||||||  | |||||||||||||||| | |||               ||||| |||||||| |||    
T  6165994 cacagttaaagttgaggtcatatcctcaccttataattggttgaaacaagtaattctcacgcctctt---------------ttttccgggaacctgaaa 6166078  T
Q  386 tcacagtcac---aatattaagagaccccgaaaaaggga-ataa---ca-aagaataacaaagagaagattatatggtgacttaaattaaaaagaattac 477  Q
    ||| ||||||   |||||||||||||||| ||||||||| | ||   || |||||||||||||||||||||||||||||| | |||||||||||||||||    
T  6166079 tcagagtcacaagaatattaagagaccccaaaaaagggatacaaagtcacaagaataacaaagagaagattatatggtgaatgaaattaaaaagaattac 6166178  T
Q  478 atcatgcacaacaagccacagtatcgacacatccaaatgtggagcctacaattggac 534  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  6166179 atcatgcacaacaagccacagcatcgacacatccaaatgtggagcctaaaattggac 6166235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 241 - 530
Target Start/End: Original strand, 6242356 - 6242655
Alignment:
Q  241 attttttatcacttctttctaacaataaaaagtaaaacttaaaatcacagttaaaggtcaggtcatatccacaccttataattggtaaacacaagtaatt 340  Q
    ||||| || |||||||||||||||||||||||||||||  ||||||| ||||||||| || ||||||||| |||||||||||||||| ||||||||||||    
T  6242356 attttctaccacttctttctaacaataaaaagtaaaacagaaaatcaaagttaaaggacatgtcatatcctcaccttataattggtagacacaagtaatt 6242455  T
Q  341 ctcacggcacttttttcaagtctcatgttttctgggaacctaaaat-----cacagtcacaatattaagagaccccgaaaaaggga-ataa---ca-aag 430  Q
    |||||| | |||||||||||||||||||||||||||||||| ||||     || |||||||||||||||||||||||||||||||| | ||   || |||    
T  6242456 ctcacgcctcttttttcaagtctcatgttttctgggaacctgaaattaatacagagtcacaatattaagagaccccgaaaaagggatacaaagtcacaag 6242555  T
Q  431 aataacaaagagaagattatatggtgacttaaattaaaaagaattacatcatgcacaacaagccacagtatcgacacatccaaatgtggagcctacaatt 530  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||  |||||||||||||||| |||||||||||||    
T  6242556 aataacaaagagaagattatatggtgacttaaattaaaaacaattacatcatgcacaacaagtcgcagcgtcgacacatccaaatgcggagcctacaatt 6242655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 117 - 249
Target Start/End: Original strand, 6235001 - 6235133
Alignment:
Q  117 gtatattttatttttaatatgccggtgctgaataataacagccaaaagaaatttgattaaatcacggttcaactatgattggaaaacaccaaatttcact 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||| ||||| |||||||||||||    
T  6235001 gtatattttatttttaatatgccggtgctgaataataacagccacgagaaatttgattaaatcatggttcaactatgattagaaaataccaaatttcact 6235100  T
Q  217 gataacaaagtggcataactttcaattttttat 249  Q
    ||||||||||||||| |||||||||||||||||    
T  6235101 gataacaaagtggcaaaactttcaattttttat 6235133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 241 - 479
Target Start/End: Original strand, 6256263 - 6256507
Alignment:
Q  241 attttttatcacttctttctaacaataaaaagtaaaacttaaaatcacagttaaaggtcaggtcatatccacaccttataattggtaaacacaagtaatt 340  Q
    ||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||     ||||||| |||||||||||||||| || ||||| |||    
T  6256263 attttgtaccacttctttctaacaataaaaagtaaaactgaaaatcacagttaaaggt-----catatcctcaccttataattggtagacgcaagttatt 6256357  T
Q  341 ctcacggcacttttttcaagtctcatgttttctgggaacctaaaatcac--agtcac---aatatt-aagagaccccgaaaaaggga-ataaca----aa 429  Q
    |||| | | |||||||||||||||||||||||||||||||| |||||||  ||||||   |||||| |||||| | ||||||||||| | || |    ||    
T  6256358 ctcaagcctcttttttcaagtctcatgttttctgggaacctgaaatcacaaagtcacaagaatattaaagagaactcgaaaaagggatacaaaatcacaa 6256457  T
Q  430 gaataacaaagagaagattatatggtgacttaaattaaaaagaattacat 479  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  6256458 gaataacaaagagaagattatatggtgaattatattaaaaagaattacat 6256507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 147 - 234
Target Start/End: Original strand, 6242195 - 6242282
Alignment:
Q  147 aataataacagccaaaagaaatttgattaaatcacggttcaactatgattggaaaacaccaaatttcactgataacaaagtggcataa 234  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  6242195 aataataacagccacaagaaatttgattaaatcatggttcaactatgattaaaaaacaccaaatttcactgataacaaagtggcataa 6242282  T

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Target: chr3; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 428 - 534
Target Start/End: Original strand, 6235271 - 6235377
Alignment:
Q  428 aagaataacaaagagaagattatatggtgacttaaattaaaaagaattacatcatgcacaacaagccacagtatcgacacatccaaatgtggagcctaca 527  Q
    |||||||| ||||||||||| ||||||||| ||||||||| ||||||||||||||||||||| |||| |||  ||||||||| |||||||||||||||||    
T  6235271 aagaataagaaagagaagataatatggtgaattaaattaagaagaattacatcatgcacaactagccgcagcgtcgacacattcaaatgtggagcctaca 6235370  T
Q  528 attggac 534  Q
    |||||||    
T  6235371 attggac 6235377  T

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Target: chr3; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 13283095 - 13283009
Alignment:
Q  13 gcataggtcagagggatttcgtaaagtggttcgagagagatatgatcaatgcatatatcttgagttgtttaattattaagccataga 99  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  13283095 gcataagtcagagggatttcgtaaagtggctcgagagagatatgatcaatgcatatatcttgagttgttttattattaggccataga 13283009  T

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Target: chr3; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 98 - 180
Target Start/End: Original strand, 6255817 - 6255899
Alignment:
Q  98 gagagaaccaaaacgtcaagtatattttatttttaatatgccggtgctgaataataacagccaaaagaaatttgattaaatca 180  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  6255817 gagagagccaaaacgacaagtatattttatttttaatatgccggtgcagaataataacagccacaagaaatttgattaaatca 6255899  T

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Target: chr3; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 6139004 - 6139091
Alignment:
Q  14 cataggtcagagggatttcgtaaagtggttcgaga--gagatatgatcaatgcatatatcttgagttgtttaattattaagccataga 99  Q
    ||||||||| |||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  6139004 cataggtcaaagggatttcgtaaagtggctcgagagagagatatgatcaatgcatatatcttgagttgtttcattattaggccataga 6139091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 6164321 - 6164403
Alignment:
Q  14 cataggtcagagggatttcgtaaagtggttcgagagagatatgatcaatgcatatatcttgagttgtttaattattaagccat 96  Q
    |||| |||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  6164321 cataagtcagagggatttcgtaatgtggctcaagagagatatgatcaatgcatatatcttgagttgtttcattattaggccat 6164403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 6234110 - 6234178
Alignment:
Q  14 cataggtcagagggatttcgtaaagtggttcgagagagatatgatcaatgcatatatcttgagttgttt 82  Q
    |||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||    
T  6234110 cataggtcagagggatttcgtaaagtgtctcgagagatatatgatcaatgcatatatcttgagttgttt 6234178  T

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Target: chr3; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 6241896 - 6241959
Alignment:
Q  14 cataggtcagagggatttcgtaaagtggttcgagagagatatgatcaatgcatatatcttgagt 77  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  6241896 cataggtcagagggattccgtaaagtggctcgagagagatatgatcaatgcatatatcttgagt 6241959  T

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Target: chr3; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 166 - 249
Target Start/End: Original strand, 6879541 - 6879624
Alignment:
Q  166 aatttgattaaatcacggttcaactatgattggaaaacaccaaatttcactgataacaaagtggcataactttcaattttttat 249  Q
    |||||| ||||| || ||| | ||||||||| ||||||||||||||||||||||||||||||| ||| || |||||||||||||    
T  6879541 aatttgcttaaaacatggtccgactatgattagaaaacaccaaatttcactgataacaaagtgccatgacattcaattttttat 6879624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 6255127 - 6255185
Alignment:
Q  17 aggtcagagggatttcgtaaagtggttcgagagagatatgatcaatgcatatatcttga 75  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||    
T  6255127 aggtcagagggatttcgtaaagtgactcgagagagatatgatcaatgcttatatcttga 6255185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 6256186 - 6256249
Alignment:
Q  183 gttcaactatgattggaaaacaccaaatttcactgataacaaagtggcataactttcaatttttt 247  Q
    |||||||||||||| ||||| |||||||||||||| |||||||||| ||||||||||||||||||    
T  6256186 gttcaactatgattagaaaa-accaaatttcactggtaacaaagtgacataactttcaatttttt 6256249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 305 - 343
Target Start/End: Original strand, 6235154 - 6235192
Alignment:
Q  305 atatccacaccttataattggtaaacacaagtaattctc 343  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  6235154 atatcctcaccttataattggtagacacaagtaattctc 6235192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 6859314 - 6859282
Alignment:
Q  45 gagagagatatgatcaatgcatatatcttgagt 77  Q
    |||||||| ||||||||||||||||||||||||    
T  6859314 gagagagacatgatcaatgcatatatcttgagt 6859282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 7746936 - 7746976
Alignment:
Q  37 agtggttcgagagagatatgatcaatgcatatatcttgagt 77  Q
    ||||| |||||||||||||||||||| |||||| |||||||    
T  7746936 agtggctcgagagagatatgatcaatacatataccttgagt 7746976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 114 - 249
Target Start/End: Complemental strand, 14553 - 14416
Alignment:
Q  114 caagtatattttatttttaatatgccggtgctgaataataacagccaaaagaaatttgattaaatcacggttcaactatgattggaaaacaccaaatttc 213  Q
    |||||||||||  ||||||||||| |||||  ||||| || ||| || | | |||||||||| |||| | | ||| ||| ||| ||||||||||||||||    
T  14553 caagtatatttactttttaatatgacggtgaagaatattatcagtcacatggaatttgattagatcatgatacaagtatcattagaaaacaccaaatttc 14454  T
Q  214 ac--tgataacaaagtggcataactttcaattttttat 249  Q
    ||  ||| ||||||||||||  || |||||||||||||    
T  14453 actttgacaacaaagtggcacgaccttcaattttttat 14416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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