View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14406_low_8 (Length: 420)
Name: NF14406_low_8
Description: NF14406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14406_low_8 |
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| [»] scaffold0057 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 16 - 415
Target Start/End: Original strand, 14452225 - 14452624
Alignment:
| Q |
16 |
cctttccctgtagttgctcacaacataaccttccttgaattgacagaaatataattcatcctcgcctaccaaccttcctacccctaagatgacaaaatct |
115 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14452225 |
cctttccctgtagttgctcacaacataacattccttgaattgacagaaatataattcatcctcgcctaccaaccttcctacccctaagatgacaaaatct |
14452324 |
T |
|
| Q |
116 |
ggttatgtaaatgctgtaattcgttcatctaagtccaatgaagcttactttttcatcaatgataagtacgcgctgttggactatggagtaaccggcaaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14452325 |
ggttatgtaaatgctgtaattcgttcatctaagtccaatgaagcttactttttcatcaatgataagtacgcgctgttggactatggagtaaccggcaaaa |
14452424 |
T |
|
| Q |
216 |
gcggaggagataaacttttgtatgggcctactcttgttcgtgatgcttttaaatcacatgctcatacaatatttggaagctatggaattgattgtgcctt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14452425 |
gcggaggagataaacttttgtatgggcctactcttgtccgtgatggttttaaatcacatgctcatacaatatttggaagctatggaattgattgtgcctt |
14452524 |
T |
|
| Q |
316 |
taacaccgataacaacgaggcattcatcttttatgaaaatttttgtgctctcatagactatgcaccacactccgacaaagacaaaataatctctgctcct |
415 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
14452525 |
tgacaccgataacaacgaggcattcatcttttatgaaaatttttgtgctctcatagactatgcaccacactccgacaaagacaaaataatcactggtcct |
14452624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 98 - 408
Target Start/End: Original strand, 3352032 - 3352336
Alignment:
| Q |
98 |
cctaagatgacaaaatctggttatgtaaatgctgtaattcgttcatctaagtccaatgaagcttactttttcatcaatgataagtacgcgctgttggact |
197 |
Q |
| |
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||||||||||||||||||||||| || |||||| | |||||||||||| | ||||||||||||||||||||| ||||||||||| || ||||||| |
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| T |
3352032 |
cctaagatgacaaaatctggttacatagatgctgcatttcgttcatctaggaacaatgaagcttactttttcatgaatgataagtatatcctattggact |
3352131 |
T |
|
| Q |
198 |
atgga---gtaaccggcaaaagcggaggagataaacttttgtatgggcctactcttgttcgtgatgcttttaaatcacatgctcatacaatatttggaag |
294 |
Q |
| |
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||| | | ||| ||||| ||||| ||||||||||||| | ||||||||| |||| |||| ||||| ||||||||| ||||||||||| |
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| T |
3352132 |
atgcaccgggaactggcaac---------gataagattttgtatgggccgagtcttgttcgcgatgggtttagatcacttgctcataccatatttggaag |
3352222 |
T |
|
| Q |
295 |
ctatggaattgattgtgcctttaacaccgataacaacgaggcattcatcttttatgaaaatttttgtgctctcatagactatgcaccacactccgacaaa |
394 |
Q |
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||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||| | ||| |
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| T |
3352223 |
ctatggaatagattgttcctttaacaccgataacaacgaagcattcatcttttatgaaaacttttgtgctctcatagactatgcaccatactcgggcaac |
3352322 |
T |
|
| Q |
395 |
gacaaaataatctc |
408 |
Q |
| |
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| |||||||||||| |
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| T |
3352323 |
gtcaaaataatctc |
3352336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 231 - 408
Target Start/End: Complemental strand, 42046435 - 42046258
Alignment:
| Q |
231 |
ttttgtatgggcctactcttgttcgtgatgcttttaaatcacatgctcatacaatatttggaagctatggaattgattgtgcctttaacaccgataacaa |
330 |
Q |
| |
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||||| ||||||| |||||||| |||||| |||||||||| ||||| |||||||||| |||||||| |||||||||||| ||| ||||||||||||| |
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| T |
42046435 |
ttttgcatgggccatctcttgttagtgatgggtttaaatcacttgctcctacaatatttcaaagctatgcaattgattgtgcatttgacaccgataacaa |
42046336 |
T |
|
| Q |
331 |
cgaggcattcatcttttatgaaaatttttgtgctctcatagactatgcaccacactccgacaaagacaaaataatctc |
408 |
Q |
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| |||||||||||||| ||||||||||||||||||| ||||||||||| ||| |||| ||| |||||| ||||||| |
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| T |
42046335 |
ccaggcattcatctttcatgaaaatttttgtgctctaatagactatgctccatactcttgcaacgacaaattaatctc |
42046258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 200
Target Start/End: Complemental strand, 42046562 - 42046460
Alignment:
| Q |
101 |
aagatgacaaaatctggttatgtaaatgctgtaattcgttcatctaagtccaatgaagcttactttttcatcaa---tgataagtacgcgctgttggact |
197 |
Q |
| |
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|||||||||||||||||||| ||| |||| |||||||||||| | ||||||||||||| |||||||||| ||||||||||| ||| ||||| | |
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| T |
42046562 |
aagatgacaaaatctggttacataagggctgcttttcgttcatctaggcacaatgaagcttacattttcatcaatgatgataagtacgtgctattggatt |
42046463 |
T |
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| Q |
198 |
atg |
200 |
Q |
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||| |
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| T |
42046462 |
atg |
42046460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 269 - 408
Target Start/End: Complemental strand, 42471584 - 42471445
Alignment:
| Q |
269 |
tcacatgctcatacaatatttggaagctatggaattgattgtgcctttaacaccgataacaacgaggcattcatcttttatgaaaatttttgtgctctca |
368 |
Q |
| |
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|||| ||||||||| |||||||||||||||||||||||||||||||| |||| ||||||| | |||||||||| ||||||||||| |||||||||||| |
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| T |
42471584 |
tcacttgctcataccgtatttggaagctatggaattgattgtgcctttgacacggataacacctaggcattcatattttatgaaaacctttgtgctctca |
42471485 |
T |
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| Q |
369 |
tagactatgcaccacactccgacaaagacaaaataatctc |
408 |
Q |
| |
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|||||||||| || || || || |||||||||||||||| |
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| T |
42471484 |
tagactatgctccgcagtcagatgaagacaaaataatctc |
42471445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 185
Target Start/End: Complemental strand, 42471743 - 42471662
Alignment:
| Q |
104 |
atgacaaaatctggttatgtaaatgctgtaattcgttcatctaagtccaatgaagcttactttttcatcaatgataagtacg |
185 |
Q |
| |
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||||||||| ||||||| | ||||||| | |||||||||||| | ||| ||||||||||||||||| |||||||| |||| |
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| T |
42471743 |
atgacaaaacctggttacattaatgctgcatttcgttcatctaggaacaacgaagcttactttttcatgaatgataaatacg |
42471662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 279 - 408
Target Start/End: Complemental strand, 37521 - 37392
Alignment:
| Q |
279 |
atacaatatttggaagctatggaattgattgtgcctttaacaccgataacaacgaggcattcatcttttatgaaaatttttgtgctctcatagactatgc |
378 |
Q |
| |
|
|||||| |||||||||| ||||||| |||||||||||| |||||||| |||||||||| ||| |||||||| || | |||||||| ||||| |||| |
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| T |
37521 |
atacaaaatttggaagcaatggaatagattgtgcctttgacaccgatgacaacgaggcgttcgtcttttatcaaggtctttgtgctaagatagaatatgt |
37422 |
T |
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| Q |
379 |
accacactccgacaaagacaaaataatctc |
408 |
Q |
| |
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||||| | |||||||||||||||||||| |
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| T |
37421 |
tccacaaactgacaaagacaaaataatctc |
37392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 98 - 181
Target Start/End: Complemental strand, 37696 - 37613
Alignment:
| Q |
98 |
cctaagatgacaaaatctggttatgtaaatgctgtaattcgttcatctaagtccaatgaagcttactttttcatcaatgataag |
181 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||| |||||||||||| | |||||||| ||||||||||||||||||||| |
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| T |
37696 |
cctaagatgacgaaatctggttacataaatgctgtatttcgttcatctaggaaaaatgaagcatactttttcatcaatgataag |
37613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 286 - 408
Target Start/End: Complemental strand, 63570 - 63448
Alignment:
| Q |
286 |
atttggaagctatggaattgattgtgcctttaacaccgataacaacgaggcattcatcttttatgaaaatttttgtgctctcatagactatgcaccacac |
385 |
Q |
| |
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|||||||||| ||||||| |||||||||||| |||||||| |||| ||||| ||| |||||||| || | |||||||| ||||| ||| | |||||| |
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| T |
63570 |
atttggaagcaatggaatagattgtgcctttgacaccgatgacaatgaggcgttcgtcttttatcaaggtctttgtgctaagatagaatatactccacac |
63471 |
T |
|
| Q |
386 |
tccgacaaagacaaaataatctc |
408 |
Q |
| |
|
| |||||||||||||||||||| |
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| T |
63470 |
actgacaaagacaaaataatctc |
63448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 63746 - 63669
Alignment:
| Q |
104 |
atgacaaaatctggttatgtaaatgctgtaattcgttcatctaagtccaatgaagcttactttttcatcaatgataag |
181 |
Q |
| |
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||||||||||||||||| ||||||| ||| |||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
63746 |
atgacaaaatctggttacataaatgcagtatttcgttcatctagaaaaaatgaagcatactttttcatcaatgataag |
63669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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