View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14406_low_9 (Length: 417)
Name: NF14406_low_9
Description: NF14406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14406_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 16016724 - 16017124
Alignment:
| Q |
1 |
caagtctataacagaagaggtattttgtttctatattttgacatcatgattgaacttagctatttcaaataaaattcttgcttgcttgaaacaatgtctt |
100 |
Q |
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| T |
16016724 |
caagtctataacagaagaggtattttgtttctatattttgacatcatgattgaacttagccatttcaaataaaattcttgcttgcttgaaacaatgtctt |
16016823 |
T |
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| Q |
101 |
gactaattattactctgaagacagacgaaccttcattgtttttagttgaatgaaatagcttaacacttgaaccaaagatttattgtatgaaatatcttaa |
200 |
Q |
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| T |
16016824 |
gactaattattactctgaagactgacaaacctttattgtttttagttgaaggaaatagcttaacacttgaaccaaagacttattgtatgaaatatcttaa |
16016923 |
T |
|
| Q |
201 |
tacttgaacctgatgtgaaat-aaaagattattaagaacaatttcgggtaggtgatactaaatagctaaacttgcttctacattttctgttgtttagttg |
299 |
Q |
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| T |
16016924 |
tacttgaacctgatgtgaaatgaaaagattattaagaacaatttcgggttggtgatactaaatagctaaacttgcttctacatttgctgttgtttagttg |
16017023 |
T |
|
| Q |
300 |
agcgaagtgactgaaaatttgccaccagagattcctggcagcgaaaccttgaaagtgatccatgctcaagctcaaaatcttctcaaagaaaatttagaat |
399 |
Q |
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| T |
16017024 |
agcgaagtgactgaaaagttgccaccagagattcccggcagtgaaaccttgaaagtgatccatgctcaagctcaaaatcttctcaaagaaaatttagaat |
16017123 |
T |
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| Q |
400 |
t |
400 |
Q |
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| T |
16017124 |
t |
16017124 |
T |
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