View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14407_low_11 (Length: 217)

Name: NF14407_low_11
Description: NF14407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14407_low_11
NF14407_low_11
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-191)||(57357-57547)
[»] chr6 (54 HSPs)
chr6 (1-191)||(28182046-28182237)
chr6 (6-188)||(28235497-28235679)
chr6 (1-191)||(28227881-28228071)
chr6 (1-191)||(28296803-28296993)
chr6 (1-191)||(28515080-28515270)
chr6 (1-181)||(28326417-28326597)
chr6 (1-181)||(28504053-28504233)
chr6 (1-191)||(28243724-28243914)
chr6 (1-190)||(28186323-28186513)
chr6 (12-191)||(29826915-29827094)
chr6 (43-188)||(26885002-26885147)
chr6 (13-185)||(26812463-26812635)
chr6 (34-154)||(27717595-27717715)
chr6 (27-154)||(27610209-27610336)
chr6 (27-188)||(26656897-26657058)
chr6 (27-188)||(26762868-26763029)
chr6 (40-188)||(26862512-26862660)
chr6 (34-140)||(26803426-26803532)
chr6 (34-188)||(31285491-31285645)
chr6 (43-188)||(25483991-25484136)
chr6 (8-185)||(26975886-26976063)
chr6 (42-187)||(27530405-27530550)
chr6 (40-188)||(26647411-26647559)
chr6 (40-188)||(26753379-26753527)
chr6 (9-188)||(28097514-28097693)
chr6 (43-153)||(25539510-25539620)
chr6 (42-188)||(27679882-27680028)
chr6 (40-154)||(27697688-27697802)
chr6 (39-185)||(28240289-28240435)
chr6 (43-188)||(25511824-25511969)
chr6 (43-188)||(26143800-26143945)
chr6 (12-185)||(26950678-26950851)
chr6 (40-140)||(27337197-27337297)
chr6 (40-140)||(27397937-27398037)
chr6 (42-153)||(27215419-27215530)
chr6 (34-153)||(28793326-28793445)
chr6 (64-99)||(29477191-29477226)
chr6 (34-140)||(25492415-25492521)
chr6 (123-185)||(27576150-27576212)
chr6 (34-140)||(28782081-28782187)
chr6 (34-140)||(28787218-28787324)
chr6 (49-155)||(29843093-29843199)
chr6 (123-188)||(2185758-2185823)
chr6 (12-185)||(25074802-25074975)
chr6 (43-188)||(25580654-25580799)
chr6 (43-188)||(26056854-26056999)
chr6 (43-188)||(26076824-26076969)
chr6 (39-140)||(27603805-27603906)
chr6 (40-99)||(27592123-27592182)
chr6 (10-153)||(28140502-28140645)
chr6 (40-154)||(27676722-27676836)
chr6 (14-76)||(31289313-31289375)
chr6 (31-99)||(26824840-26824908)
chr6 (6-82)||(26938067-26938143)
[»] scaffold0038 (4 HSPs)
scaffold0038 (6-188)||(35659-35841)
scaffold0038 (1-191)||(28379-28569)
scaffold0038 (1-191)||(43886-44076)
scaffold0038 (39-185)||(40451-40597)
[»] chr4 (3 HSPs)
chr4 (10-188)||(5090022-5090200)
chr4 (43-153)||(18723186-18723296)
chr4 (62-98)||(7827978-7828014)
[»] chr2 (2 HSPs)
chr2 (9-188)||(3280591-3280770)
chr2 (12-182)||(17992289-17992459)
[»] chr1 (4 HSPs)
chr1 (6-185)||(26136823-26137002)
chr1 (40-188)||(28126777-28126925)
chr1 (76-154)||(267478-267556)
chr1 (34-188)||(28163472-28163626)
[»] chr5 (1 HSPs)
chr5 (34-185)||(16691802-16691953)
[»] scaffold0349 (1 HSPs)
scaffold0349 (34-154)||(2635-2755)
[»] scaffold0277 (2 HSPs)
scaffold0277 (27-153)||(3801-3927)
scaffold0277 (34-140)||(12771-12877)
[»] chr8 (2 HSPs)
chr8 (27-140)||(29272927-29273040)
chr8 (1-84)||(16441092-16441175)
[»] scaffold0419 (1 HSPs)
scaffold0419 (34-140)||(8467-8573)


Alignment Details
Target: scaffold0019 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 57357 - 57547
Alignment:
Q  1 tatgctctttcaatcccatgagctgctagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaa 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  57357 tatgctctttcaatcccatgacctgctagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaa 57456  T
Q  101 cctgtaattgcttcagctcgtgaacatcatcgagaatcaacaaaaccttctttcggtgaagtctttgctttatgattggaattccctcgtt 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  57457 cctgtaattgcttcagctcgtgaacatcatcgagaatcaacaaaaccttctttcggtgaagcctttgctttatgattggaattccctcgtt 57547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 144; Significance: 7e-76; HSPs: 54)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 28182237 - 28182046
Alignment:
Q  1 tatgctctttcaatcccatgagctgctagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaa 100  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28182237 tatgctctttcaatcccatgacctactagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaattcctccagccaaaa 28182138  T
Q  101 cctgtaattgcttcagctcgtgaacatcatcgagaatcaacaaaaccttctttcggtgaagtctttgc-tttatgattggaattccctcgtt 191  Q
    |||| ||||||||||| |||||||||||||| |||||||| | |||||||||||||||||| |||||| |||||||||||| ||||||||||    
T  28182137 cctgcaattgcttcagttcgtgaacatcatctagaatcaatagaaccttctttcggtgaagcctttgcttttatgattggagttccctcgtt 28182046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 6 - 188
Target Start/End: Complemental strand, 28235679 - 28235497
Alignment:
Q  6 tctttcaatcccatgagctgctagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgt 105  Q
    ||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| | |||| |||||||||||     
T  28235679 tctttcaatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttacttccaggaccaaaccaatcaatttctcccgccaaaacctgc 28235580  T
Q  106 aattgcttcagctcgtgaacatcatcgagaatcaacaaaaccttctttcggtgaagtctttgctttatgattggaattccctc 188  Q
    |||||||| || |||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  28235579 aattgctttagttcgtgaacatcatctagaatcaacagaaccttctttcggtgaagcctttgctttatgattggaattccctc 28235497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 28228071 - 28227881
Alignment:
Q  1 tatgctctttcaatcccatgagctgctagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaa 100  Q
    |||||||||||||||||||||  |||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28228071 tatgctctttcaatcccatgacttgctagcaattgtttgtttcgagtggtaatgatcactttacttccaggaccaaaccaatcaagtcctccagccaaaa 28227972  T
Q  101 cctgtaattgcttcagctcgtgaacatcatcgagaatcaacaaaaccttctttcggtgaagtctttgctttatgattggaattccctcgtt 191  Q
    || | |||||||| || | ||||||||||||||||||||| | ||| |||||||||||||| |||||||||| || |||||||||||||||    
T  28227971 cccgcaattgctttagtttgtgaacatcatcgagaatcaatagaactttctttcggtgaagcctttgctttaagactggaattccctcgtt 28227881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 28296803 - 28296993
Alignment:
Q  1 tatgctctttcaatcccatgagctgctagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaa 100  Q
    ||||||||||||||||||||| |  ||||||||| ||  ||| |||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||    
T  28296803 tatgctctttcaatcccatgaccatctagcaattttttttcttgagtggtaatgatcactttacttccaagaccaaaccaatcaagtcgtccagccaaaa 28296902  T
Q  101 cctgtaattgcttcagctcgtgaacatcatcgagaatcaacaaaaccttctttcggtgaagtctttgctttatgattggaattccctcgtt 191  Q
    | || ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28296903 cttgcaattgcttcagttcatgaacatcatctagaatcaacaaaaccttctttcggtgaagcctttgctttatgattggaattccctcgtt 28296993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 28515270 - 28515080
Alignment:
Q  1 tatgctctttcaatcccatgagctgctagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaa 100  Q
    ||||||||||||||||||||| |  ||||||||| ||  ||| |||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||    
T  28515270 tatgctctttcaatcccatgaccatctagcaattttttttcttgagtggtaatgatcactttacttccaagaccaaaccaatcaagtcgtccagccaaaa 28515171  T
Q  101 cctgtaattgcttcagctcgtgaacatcatcgagaatcaacaaaaccttctttcggtgaagtctttgctttatgattggaattccctcgtt 191  Q
    | || ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28515170 cttgcaattgcttcagttcatgaacatcatctagaatcaacaaaaccttctttcggtgaagcctttgctttatgattggaattccctcgtt 28515080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 28326597 - 28326417
Alignment:
Q  1 tatgctctttcaatcccatgagctgctagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaa 100  Q
    ||||||||||||||||| |||  |  |||||| |||| |||||||||||||| ||||||| |||| |||||||| |||||||||||||||||||||||||    
T  28326597 tatgctctttcaatcccgtgactttttagcaaatgtttgtctcgagtggtaacgatcactctactgccaggaccgaaccaatcaagtcctccagccaaaa 28326498  T
Q  101 cctgtaattgcttcagctcgtgaacatcatcgagaatcaacaaaaccttctttcggtgaagtctttgctttatgattggaa 181  Q
    |||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  28326497 cctgcaattgcttcagttcgtgaacatcatcgagaatcaacagaaccttctttcggtgaagcctttgctttatgattggaa 28326417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 28504233 - 28504053
Alignment:
Q  1 tatgctctttcaatcccatgagctgctagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaa 100  Q
    ||||||||||||||||| |||  |  |||||| |||| |||||||||||||| ||||||| |||| |||||||| |||||||||||||||||||||||||    
T  28504233 tatgctctttcaatcccgtgactttttagcaaatgtttgtctcgagtggtaacgatcactctactgccaggaccgaaccaatcaagtcctccagccaaaa 28504134  T
Q  101 cctgtaattgcttcagctcgtgaacatcatcgagaatcaacaaaaccttctttcggtgaagtctttgctttatgattggaa 181  Q
    |||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  28504133 cctgcaattgcttcagttcgtgaacatcatcgagaatcaacagaaccttctttcggtgaagcctttgctttatgattggaa 28504053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 28243914 - 28243724
Alignment:
Q  1 tatgctctttcaatcccatgagctgctagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaa 100  Q
    |||||||||||||||||||||  |  |||||| |||  |||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||| ||||    
T  28243914 tatgctctttcaatcccatgactttttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggaccgaaccaatcaagtcctccagctaaaa 28243815  T
Q  101 cctgtaattgcttcagctcgtgaacatcatcgagaatcaacaaaaccttctttcggtgaagtctttgctttatgattggaattccctcgtt 191  Q
    |||| ||||||||||| |||||||||||||||||||| | || |||||| ||||||||||| |||| |||||| |||||||||||||||||    
T  28243814 cctgcaattgcttcagttcgtgaacatcatcgagaattagcagaaccttgtttcggtgaagccttttctttattattggaattccctcgtt 28243724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 28186513 - 28186323
Alignment:
Q  1 tatgctctttcaatcccatgagctgctagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaa 100  Q
    |||||||||||||||||||||   ||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||  || ||||||||||||||    
T  28186513 tatgctctttcaatcccatgatgagctagcaattgtttgtctcgagtggtaatgatcacaatactaccaggaccaaaccaacgaaatcctccagccaaaa 28186414  T
Q  101 cctgtaa-ttgcttcagctcgtgaacatcatcgagaatcaacaaaaccttctttcggtgaagtctttgctttatgattggaattccctcgt 190  Q
    | |  || | |||| || |||||||||||||||||||||||||||||||||||| ||||||| |||| || ||||||||||||||||||||    
T  28186413 cttccaactggctttagttcgtgaacatcatcgagaatcaacaaaaccttcttttggtgaagccttttctctatgattggaattccctcgt 28186323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 12 - 191
Target Start/End: Complemental strand, 29827094 - 29826915
Alignment:
Q  12 aatcccatgagctgctagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgc 111  Q
    ||||||||||  || |||||| |||| |||||||||||||||||||||| | || |||||||||||||||||||||||||| |||| ||| || ||||||    
T  29827094 aatcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgccataacttgcaattgc 29826995  T
Q  112 ttcagctcgtgaacatcatcgagaatcaacaaaaccttctttcggtgaagtctttgctttatgattggaattccctcgtt 191  Q
     |||  | || ||| || || |||||||| |  || ||||||||    || ||||||||||| ||||||||||| |||||    
T  29826994 ctcatgttgtcaacgtcgtcaagaatcaaaagtactttctttcgtcctagcctttgctttattattggaattccttcgtt 29826915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 43 - 188
Target Start/End: Complemental strand, 26885147 - 26885002
Alignment:
Q  43 cgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcgagaatcaaca 142  Q
    |||||||||||||| ||  | || ||| ||||||||||||||||||||||||||||| ||| ||  |||| ||  | || ||||||||| |||||||| |    
T  26885147 cgagtggtaatgatgaccctgcttccacgaccaaaccaatcaagtcctccagccaaagcctctagctgctccattttgtcaacatcatcaagaatcaaaa 26885048  T
Q  143 aaaccttctttcggtgaagtctttgctttatgattggaattccctc 188  Q
     || ||||||||  || ||||||| |||||||| ||||||||||||    
T  26885047 gaatcttctttctatgtagtctttcctttatgagtggaattccctc 26885002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 26812635 - 26812463
Alignment:
Q  13 atcccatgagctgctagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgct 112  Q
    |||||||||  || |||||| |||  |||||||||||||||||| ||| |||| |||||||| | |||| || |  ||||| |||||||||  |||||||    
T  26812635 atcccatgacatgatagcaaatgtctgtctcgagtggtaatgatgactctacttccaggaccgagccaaccaggctctccaaccaaaaccttcaattgct 26812536  T
Q  113 tcagctcgtgaacatcatcgagaatcaacaaaaccttctttcggtgaagtctttgctttatgattggaattcc 185  Q
    |  | | || |||||||||||||||||||||||| |||||| | || || || |  |||||||||||||||||    
T  26812535 ttggtttgtcaacatcatcgagaatcaacaaaactttcttttgatgcagcctatcttttatgattggaattcc 26812463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 34 - 154
Target Start/End: Original strand, 27717595 - 27717715
Alignment:
Q  34 tgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcga 133  Q
    |||| |||||||||||||||||| ||||| || ||| | || ||||||||| |||||||||||||| | |||| ||||||||  | || ||||||||| |    
T  27717595 tgtttgtctcgagtggtaatgatgactttgcttccacggccgaaccaatcaggtcctccagccaaagcatgtagttgcttcatattgtcaacatcatcaa 27717694  T
Q  134 gaatcaacaaaaccttctttc 154  Q
    ||||||| | |||||||||||    
T  27717695 gaatcaaaagaaccttctttc 27717715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 154
Target Start/End: Original strand, 27610209 - 27610336
Alignment:
Q  27 tagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaaca 126  Q
    |||||| |||| ||||||||||| |||||| ||||| || ||| | || ||||||||| |||||||||||||| | |||| ||||||||  | || ||||    
T  27610209 tagcaagtgtttgtctcgagtggcaatgatgactttgcttccacggccgaaccaatcaggtcctccagccaaagcatgtagttgcttcatattgtcaaca 27610308  T
Q  127 tcatcgagaatcaacaaaaccttctttc 154  Q
    ||||| |||||||| | |||||||||||    
T  27610309 tcatcaagaatcaaaagaaccttctttc 27610336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 188
Target Start/End: Complemental strand, 26657058 - 26656897
Alignment:
Q  27 tagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaaca 126  Q
    |||||| ||||  |||| |||||||||||| ||| | || |||  ||| ||||||||||||||||| |||||| ||| ||  |||| ||| | || ||||    
T  26657058 tagcaagtgtttatctctagtggtaatgatgactctgcttccacaaccgaaccaatcaagtcctcctgccaaagcctctagctgctccagtttgtcaaca 26656959  T
Q  127 tcatcgagaatcaacaaaaccttctttcggtgaagtctttgctttatgattggaattccctc 188  Q
    |||||||||||||| | || ||||||||     ||||||| |||||||||||||||||||||    
T  26656958 tcatcgagaatcaaaagaatcttctttctagatagtctttcctttatgattggaattccctc 26656897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 188
Target Start/End: Complemental strand, 26763029 - 26762868
Alignment:
Q  27 tagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaaca 126  Q
    |||||| ||||  |||| |||||||||||| ||| | || |||  ||| ||||||||||||||||| |||||| ||| ||  |||| ||| | || ||||    
T  26763029 tagcaagtgtttatctctagtggtaatgatgactctgcttccacaaccgaaccaatcaagtcctcctgccaaagcctctagctgctccagtttgtcaaca 26762930  T
Q  127 tcatcgagaatcaacaaaaccttctttcggtgaagtctttgctttatgattggaattccctc 188  Q
    |||||||||||||| | || ||||||||     ||||||| |||||||||||||||||||||    
T  26762929 tcatcgagaatcaaaagaatcttctttctagatagtctttcctttatgattggaattccctc 26762868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 40 - 188
Target Start/End: Complemental strand, 26862660 - 26862512
Alignment:
Q  40 tctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcgagaatca 139  Q
    ||||||||||||||||| ||| |||| ||| ||||||||||||||||||||||||| ||  ||| ||  || | ||| | || |||||||||||||||||    
T  26862660 tctcgagtggtaatgatgactctacttccatgaccaaaccaatcaagtcctccagctaatgcctctagctgttccagtttgtcaacatcatcgagaatca 26862561  T
Q  140 acaaaaccttctttcggtgaagtctttgctttatgattggaattccctc 188  Q
    | | || |||| |||  |  ||||||| |||||| | ||||||||||||    
T  26862560 aaagaatcttcattctatttagtctttcctttataagtggaattccctc 26862512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 140
Target Start/End: Complemental strand, 26803532 - 26803426
Alignment:
Q  34 tgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcga 133  Q
    |||| |||||||||||||||||| ||  | || ||| | |||||||||||| |||||||||||||| | |||| ||||| ||  |||| |||||||||||    
T  26803532 tgtttgtctcgagtggtaatgatgaccctgcttccatggccaaaccaatcaggtcctccagccaaagcatgtagttgctccatatcgtcaacatcatcga 26803433  T
Q  134 gaatcaa 140  Q
    |||||||    
T  26803432 gaatcaa 26803426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 188
Target Start/End: Complemental strand, 31285645 - 31285491
Alignment:
Q  34 tgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcga 133  Q
    |||| |||||||||||||||||| ||| | || ||| | || |||||||||||||||||||||||| | || | ||| ||||  | || |||||||||||    
T  31285645 tgtttgtctcgagtggtaatgatgactctgcttccacggccgaaccaatcaagtcctccagccaaagcatgcagttgattcatattgtcaacatcatcga 31285546  T
Q  134 gaatcaacaaaaccttctttcggtgaagtctttgctttatgattggaattccctc 188  Q
    ||||||| | || ||||||||     || |||| ||| |||||||||||||||||    
T  31285545 gaatcaaaagaatcttctttctacatagcctttccttaatgattggaattccctc 31285491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 188
Target Start/End: Complemental strand, 25484136 - 25483991
Alignment:
Q  43 cgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcgagaatcaaca 142  Q
    |||||||||||||| ||| | || ||| |||| |||||||||||||||||||||||| ||| ||  |||| ||| | || ||||||||| | |||||| |    
T  25484136 cgagtggtaatgatgactctgcttccatgaccgaaccaatcaagtcctccagccaaagcctctagctgctccagtttgtcaacatcatcaacaatcaaaa 25484037  T
Q  143 aaaccttctttcggtgaagtctttgctttatgattggaattccctc 188  Q
     || ||||||||     ||||||| |||||||||||| ||||||||    
T  25484036 gaatcttctttctagatagtctttcctttatgattggtattccctc 25483991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 185
Target Start/End: Complemental strand, 26976063 - 26975886
Alignment:
Q  8 tttcaatcccatgagctgctagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaa 107  Q
    ||||||||| |||| ||| ||||||||||| |||||||||||||||||| ||| | || ||| |||||| |||| || |  ||||   ||||||||| ||    
T  26976063 tttcaatccgatgacctgatagcaattgtttgtctcgagtggtaatgatgactctgctgccatgaccaagccaaccaggctctccgatcaaaacctgcaa 26975964  T
Q  108 ttgcttcagctcgtgaacatcatcgagaatcaacaaaaccttctttcggtgaagtctttgctttatgattggaattcc 185  Q
    |||||| |  | || ||  |||||||||||||||||||| |||||  | |  || ||| | |||||||||||||||||    
T  26975963 ttgctttattttgtcaatgtcatcgagaatcaacaaaactttcttctgatatagccttcgttttatgattggaattcc 26975886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 187
Target Start/End: Original strand, 27530405 - 27530550
Alignment:
Q  42 tcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcgagaatcaac 141  Q
    |||||| |||||||| ||| |||| |||||||| |||||||||||||||||||||||  ||| ||  || | ||| | || ||||||||| ||||||||     
T  27530405 tcgagtagtaatgatgactctactcccaggaccgaaccaatcaagtcctccagccaaggcctctagctgatccagtttgtcaacatcatcaagaatcaaa 27530504  T
Q  142 aaaaccttctttcggtgaagtctttgctttatgattggaattccct 187  Q
    | || ||||||||     || |||||||| ||||||||||||||||    
T  27530505 agaatcttctttctacatagcctttgcttaatgattggaattccct 27530550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 188
Target Start/End: Complemental strand, 26647559 - 26647411
Alignment:
Q  40 tctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcgagaatca 139  Q
    ||||| ||||| ||||| ||| | || |||||||| |||||||||||||||||||||||| ||| ||  || | ||| | || |||||||||||||||||    
T  26647559 tctcgggtggtgatgatgactctgcttccaggaccgaaccaatcaagtcctccagccaaagcctctagctgatccagttggttaacatcatcgagaatca 26647460  T
Q  140 acaaaaccttctttcggtgaagtctttgctttatgattggaattccctc 188  Q
    | | || ||||||||     || |||| ||| |||||||||||||||||    
T  26647459 aaagaatcttctttctacatagcctttccttaatgattggaattccctc 26647411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 188
Target Start/End: Complemental strand, 26753527 - 26753379
Alignment:
Q  40 tctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcgagaatca 139  Q
    ||||| ||||| ||||| ||| | || |||||||| |||||||||||||||||||||||| ||| ||  || | ||| | || |||||||||||||||||    
T  26753527 tctcgggtggtgatgatgactctgcttccaggaccgaaccaatcaagtcctccagccaaagcctctagctgatccagttggttaacatcatcgagaatca 26753428  T
Q  140 acaaaaccttctttcggtgaagtctttgctttatgattggaattccctc 188  Q
    | | || ||||||||     || |||| ||| |||||||||||||||||    
T  26753427 aaagaatcttctttctacatagcctttccttaatgattggaattccctc 26753379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 188
Target Start/End: Original strand, 28097514 - 28097693
Alignment:
Q  9 ttcaatcccatgagctgctagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaat 108  Q
    |||||||||||||  ||||||||| | ||  |||||||||||||  |||||| |||| |||| |||||||||||||   |||||||||| | | || |      
T  28097514 ttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccatagcttgcagc 28097613  T
Q  109 tgcttcagctcgtgaacatcatcgagaatcaacaaaaccttctttcggtgaagtctttgctttatgattggaattccctc 188  Q
    |||||||  |  | ||  || ||||||||||| | |||||||||| | || || ||||| ||||||||||||||||||||    
T  28097614 tgcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgttttatgattggaattccctc 28097693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 153
Target Start/End: Complemental strand, 25539620 - 25539510
Alignment:
Q  43 cgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcgagaatcaaca 142  Q
    |||||||||||||| ||| | || |||||||| |||||||||||||||||||||||| ||| ||  ||||  || | || ||||||||| |||||||| |    
T  25539620 cgagtggtaatgatgactctgcttccaggaccgaaccaatcaagtcctccagccaaagcctctagctgctctagtttgtcaacatcatcaagaatcaaaa 25539521  T
Q  143 aaaccttcttt 153  Q
     || |||||||    
T  25539520 gaatcttcttt 25539510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 188
Target Start/End: Complemental strand, 27680028 - 27679882
Alignment:
Q  42 tcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcgagaatcaac 141  Q
    ||||||||||||||| ||| | || |||   || |||||||||||||||||||||||| | || | ||||||||  | || ||||||||||||||||||     
T  27680028 tcgagtggtaatgatgactctgcttccacatccgaaccaatcaagtcctccagccaaagcatgcagttgcttcaaattgtcaacatcatcgagaatcaaa 27679929  T
Q  142 aaaaccttctttcggtgaagtctttgctttatgattggaattccctc 188  Q
    | || ||||||||     | ||||| |||||||| ||||||||||||    
T  27679928 agaatcttctttctacataatctttcctttatgactggaattccctc 27679882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 154
Target Start/End: Original strand, 27697688 - 27697802
Alignment:
Q  40 tctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcgagaatca 139  Q
    ||||| ||||| ||||| ||| | || ||||||||||||||||| ||||||||||||||| ||||||  || | ||| | || |||||| ||||||||||    
T  27697688 tctcgggtggtgatgatgactctgcttccaggaccaaaccaatcgagtcctccagccaaagcctgtagctgatccagtttgtcaacatcgtcgagaatca 27697787  T
Q  140 acaaaaccttctttc 154  Q
    | | || ||||||||    
T  27697788 aaagaatcttctttc 27697802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 185
Target Start/End: Complemental strand, 28240435 - 28240289
Alignment:
Q  39 gtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcgagaatc 138  Q
    |||||||||||||||||| ||| | ||  ||||||  ||||||||||| |||||||||||| |||| | ||||||||| || |  | || ||| ||||||    
T  28240435 gtctcgagtggtaatgatgactctgctgtcaggactgaaccaatcaagccctccagccaaaccctgcagttgcttcagttcatccatattatctagaatc 28240336  T
Q  139 aacaaaaccttctttcggtgaagtctttgctttatgattggaattcc 185  Q
    || | ||| |||||  |||| ||  ||||||||||||| ||||||||    
T  28240335 aaaagaacattcttatggtgtaggatttgctttatgataggaattcc 28240289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 188
Target Start/End: Complemental strand, 25511969 - 25511824
Alignment:
Q  43 cgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcgagaatcaaca 142  Q
    |||||||||||||| ||| | || |||||||| ||||| |||||||||||||||||| ||| ||  |||| ||| | || |||||| || |||||||| |    
T  25511969 cgagtggtaatgatgactctgcttccaggaccgaaccagtcaagtcctccagccaaagcctctagctgctccagtttgtcaacatcgtcaagaatcaaaa 25511870  T
Q  143 aaaccttctttcggtgaagtctttgctttatgattggaattccctc 188  Q
     || ||||||||     ||||||| |||||| ||||| ||||||||    
T  25511869 gaatcttctttctagatagtctttcctttataattggtattccctc 25511824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 188
Target Start/End: Complemental strand, 26143945 - 26143800
Alignment:
Q  43 cgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcgagaatcaaca 142  Q
    |||||||||||||| ||  | || ||| |||| |||||||||||||||||||||||| ||| ||  |||| ||| | || ||||||||| |||||||| |    
T  26143945 cgagtggtaatgatgaccctgcttccatgaccgaaccaatcaagtcctccagccaaagcctctagctgctccagtttgtcaacatcatcaagaatcaaaa 26143846  T
Q  143 aaaccttctttcggtgaagtctttgctttatgattggaattccctc 188  Q
     || ||||||||     ||||||| ||| ||||||| |||||||||    
T  26143845 gaatcttctttctagatagtctttccttaatgattgaaattccctc 26143800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 185
Target Start/End: Complemental strand, 26950851 - 26950678
Alignment:
Q  12 aatcccatgagctgctagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgc 111  Q
    ||||||||||  || || ||| |||| ||| |||||||||||||| ||| | || ||| |||||| |||| || |  |||||  ||||||||| ||||||    
T  26950851 aatcccatgacatgataacaaatgtttgtcacgagtggtaatgatgactctgctgccacgaccaagccaaccaggctctccaatcaaaacctgcaattgc 26950752  T
Q  112 ttcagctcgtgaacatcatcgagaatcaacaaaaccttctttcggtgaagtctttgctttatgattggaattcc 185  Q
    || |  | || |||||||||||||||||||||||| |||||  | |  || ||| | |||||||||||||||||    
T  26950751 tttattttgtcaacatcatcgagaatcaacaaaactttcttctgatatagccttcgttttatgattggaattcc 26950678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 140
Target Start/End: Original strand, 27337197 - 27337297
Alignment:
Q  40 tctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcgagaatca 139  Q
    ||||| ||||| ||||| ||| | || |||||||| |||||||||||||||||||||||| ||| ||  || | ||| | || |||||||||||||||||    
T  27337197 tctcgggtggtgatgatgactctgcttccaggaccgaaccaatcaagtcctccagccaaagcctctagctgatccagttggtcaacatcatcgagaatca 27337296  T
Q  140 a 140  Q
    |    
T  27337297 a 27337297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 140
Target Start/End: Original strand, 27397937 - 27398037
Alignment:
Q  40 tctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcgagaatca 139  Q
    ||||| ||||| ||||| ||| | || |||||||| |||||||||||||||||||||||| ||| ||  || | ||| | || |||||||||||||||||    
T  27397937 tctcgggtggtgatgatgactctgcttccaggaccgaaccaatcaagtcctccagccaaagcctctagctgatccagttggtcaacatcatcgagaatca 27398036  T
Q  140 a 140  Q
    |    
T  27398037 a 27398037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 153
Target Start/End: Complemental strand, 27215530 - 27215419
Alignment:
Q  42 tcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcgagaatcaac 141  Q
    |||||| |||||||| ||| |||| |||  |||||||||||||||||||||||||||| ||| ||  ||||  || | || ||||||||| ||||||||     
T  27215530 tcgagtcgtaatgatgactctacttccaccaccaaaccaatcaagtcctccagccaaagcctctagctgctctagtttgtcaacatcatcaagaatcaaa 27215431  T
Q  142 aaaaccttcttt 153  Q
    | || |||||||    
T  27215430 agaatcttcttt 27215419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 153
Target Start/End: Complemental strand, 28793445 - 28793326
Alignment:
Q  34 tgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcga 133  Q
    |||| ||||||||| |||||||| ||  | || ||| | || ||||||||| ||||||| |||||| | |||| ||||||||  |||| |||||||||||    
T  28793445 tgtttgtctcgagtcgtaatgatgaccctgcttccacggccgaaccaatcaggtcctcctgccaaagcatgtagttgcttcatatcgtcaacatcatcga 28793346  T
Q  134 gaatcaacaaaaccttcttt 153  Q
    ||||||| | || |||||||    
T  28793345 gaatcaaaagaatcttcttt 28793326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 29477191 - 29477226
Alignment:
Q  64 ctaccaggaccaaaccaatcaagtcctccagccaaa 99  Q
    ||||||||||||||||||||||||||||||||||||    
T  29477191 ctaccaggaccaaaccaatcaagtcctccagccaaa 29477226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 25492415 - 25492521
Alignment:
Q  34 tgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcga 133  Q
    |||| |||||||||||||||||| |||   || ||| |||| ||||||||||||||| |||||||| ||| ||  |||| |||   || |||||||||||    
T  25492415 tgtttgtctcgagtggtaatgataactccgcttccacgaccgaaccaatcaagtccttcagccaaatcctctagctgctccagtctgtcaacatcatcga 25492514  T
Q  134 gaatcaa 140  Q
    |||||||    
T  25492515 gaatcaa 25492521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 27576150 - 27576212
Alignment:
Q  123 aacatcatcgagaatcaacaaaaccttctttcggtgaagtctttgctttatgattggaattcc 185  Q
    |||||||||||||||||||||||| ||||||   || || ||||| |||||||||||||||||    
T  27576150 aacatcatcgagaatcaacaaaactttctttgtatgtagcctttgttttatgattggaattcc 27576212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 140
Target Start/End: Complemental strand, 28782187 - 28782081
Alignment:
Q  34 tgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcga 133  Q
    |||| |||||||||||||||||| ||  | || ||| | || ||||||||| ||||||| |||||| | |||| ||||| ||  |||| |||||||||||    
T  28782187 tgtttgtctcgagtggtaatgatgaccctgcttccacggccgaaccaatcaggtcctcctgccaaagcatgtagttgctccatatcgtcaacatcatcga 28782088  T
Q  134 gaatcaa 140  Q
    |||||||    
T  28782087 gaatcaa 28782081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 140
Target Start/End: Complemental strand, 28787324 - 28787218
Alignment:
Q  34 tgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcga 133  Q
    |||| ||||||||| |||||||| ||  | || ||| | || ||||||||| ||||||| |||||| | |||| ||||||||  |||| |||||||||||    
T  28787324 tgtttgtctcgagtcgtaatgatgaccctgcttccacggccgaaccaatcaggtcctcctgccaaagcatgtagttgcttcatatcgtcaacatcatcga 28787225  T
Q  134 gaatcaa 140  Q
    |||||||    
T  28787224 gaatcaa 28787218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 155
Target Start/End: Original strand, 29843093 - 29843199
Alignment:
Q  49 gtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcgagaatcaacaaaacct 148  Q
    |||||||||||| | ||||||||||||||||| |||||||| || |||| ||| || |||||| | || | || |||||| || |||||||| | ||| |    
T  29843093 gtaatgatcactctgctaccaggaccaaaccagtcaagtccgcccgccataacttgcaattgccttaggttgtcaacatcgtcaagaatcaaaagaactt 29843192  T
Q  149 tctttcg 155  Q
    |||||||    
T  29843193 tctttcg 29843199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 188
Target Start/End: Complemental strand, 2185823 - 2185758
Alignment:
Q  123 aacatcatcgagaatcaacaaaaccttctttcggtgaagtctttgctttatgattggaattccctc 188  Q
    ||||||||| ||||||||||||||||||||  | || ||||||| |||||||| | ||||||||||    
T  2185823 aacatcatcaagaatcaacaaaaccttcttctgttgtagtctttcctttatgaattgaattccctc 2185758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 185
Target Start/End: Complemental strand, 25074975 - 25074802
Alignment:
Q  12 aatcccatgagctgctagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgc 111  Q
    ||||||||||| || || ||| |||| |||||||||||||||||| ||| | || ||| |||| | |||   | |  ||||  |||||||||| ||||||    
T  25074975 aatcccatgagatgataacaaatgtttgtctcgagtggtaatgatgactctgctgccacgaccgagccagctaggctctccgaccaaaacctgcaattgc 25074876  T
Q  112 ttcagctcgtgaacatcatcgagaatcaacaaaaccttctttcggtgaagtctttgctttatgattggaattcc 185  Q
    || || | || ||  |||||||||||||||||||| |||||| |    || ||| |||||||||||||||||||    
T  25074875 tttagtttgtcaatgtcatcgagaatcaacaaaactttcttttgacatagccttcgctttatgattggaattcc 25074802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 188
Target Start/End: Complemental strand, 25580799 - 25580654
Alignment:
Q  43 cgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcgagaatcaaca 142  Q
    |||||||||||||| ||  | || ||| |||| |||||||||||||||||||||||| ||| ||  |||| ||| | || ||||||||| | |||||| |    
T  25580799 cgagtggtaatgatgacactgcttccatgaccgaaccaatcaagtcctccagccaaagcctctagctgctccagtttgtcaacatcatcaaaaatcaaaa 25580700  T
Q  143 aaaccttctttcggtgaagtctttgctttatgattggaattccctc 188  Q
     || ||||||||     ||||||| ||| ||||||| |||||||||    
T  25580699 gaatcttctttctagatagtctttccttaatgattgaaattccctc 25580654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 188
Target Start/End: Complemental strand, 26056999 - 26056854
Alignment:
Q  43 cgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcgagaatcaaca 142  Q
    |||||||||||||| ||| | || ||| |||| |||||||||||||||||||||||| | | ||  |||| ||| | || |||||| || |||||||| |    
T  26056999 cgagtggtaatgatgactctgcttccaagaccgaaccaatcaagtcctccagccaaagcgtctagctgctccagtttgtcaacatcgtcaagaatcaaaa 26056900  T
Q  143 aaaccttctttcggtgaagtctttgctttatgattggaattccctc 188  Q
     || ||||||||     ||||||| |||||| ||||| ||||||||    
T  26056899 gaatcttctttctagatagtctttcctttataattggtattccctc 26056854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 188
Target Start/End: Complemental strand, 26076969 - 26076824
Alignment:
Q  43 cgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcgagaatcaaca 142  Q
    |||||||||||||| ||| | || ||| |||| |||||||||||||||||||||||| | | ||  |||| ||| | || |||||| || |||||||| |    
T  26076969 cgagtggtaatgatgactctgcttccaagaccgaaccaatcaagtcctccagccaaagcgtctagctgctccagtttgtcaacatcgtcaagaatcaaaa 26076870  T
Q  143 aaaccttctttcggtgaagtctttgctttatgattggaattccctc 188  Q
     || ||||||||     ||||||| |||||| ||||| ||||||||    
T  26076869 gaatcttctttctagatagtctttcctttataattggtattccctc 26076824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 140
Target Start/End: Original strand, 27603805 - 27603906
Alignment:
Q  39 gtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcgagaatc 138  Q
    |||||||||||||||||| ||  | || ||| | |||||||||||| || |||| |||||| |||||| ||||  ||  |||| ||||||||||||||||    
T  27603805 gtctcgagtggtaatgatgaccctgcttccaagcccaaaccaatcaggttctcctgccaaagcctgtagttgccccatatcgtcaacatcatcgagaatc 27603904  T
Q  139 aa 140  Q
    ||    
T  27603905 aa 27603906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 27592123 - 27592182
Alignment:
Q  40 tctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaa 99  Q
    ||||| ||||| ||||| ||| | || |||||||| ||||||||||||||||||||||||    
T  27592123 tctcgggtggtgatgatgactctgcttccaggaccgaaccaatcaagtcctccagccaaa 27592182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 153
Target Start/End: Complemental strand, 28140645 - 28140502
Alignment:
Q  10 tcaatcccatgagctgctagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaatt 109  Q
    ||||||||||||  ||||||||| |||| ||||||||| |||| ||  ||   ||||||| |||||| ||||| | |  |||||||||||||||  || |    
T  28140645 tcaatcccatgacatgctagcaaatgtttgtctcgagttgtaacgacaacccgactaccatgaccaagccaattagggtctccagccaaaaccttcaact 28140546  T
Q  110 gcttcagctcgtgaacatcatcgagaatcaacaaaaccttcttt 153  Q
    | || || || | ||| |||||||||||||| | ||||||||||    
T  28140545 gttttagttcatcaacgtcatcgagaatcaaaagaaccttcttt 28140502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 154
Target Start/End: Original strand, 27676722 - 27676836
Alignment:
Q  40 tctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcgagaatca 139  Q
    ||||| ||||| ||||| ||| | || ||||||||||||||||| |||| |||||||||| ||| ||  || | ||| | || ||||||||| |||||||    
T  27676722 tctcgggtggtgatgatgactctgcttccaggaccaaaccaatcgagtcttccagccaaagcctctagctgatccagtttgtcaacatcatcaagaatca 27676821  T
Q  140 acaaaaccttctttc 154  Q
    | | || ||||||||    
T  27676822 aaagaatcttctttc 27676836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 31289375 - 31289313
Alignment:
Q  14 tcccatgagctgctagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaa 76  Q
    |||||||| ||| ||||||||||| ||||| |||||||||||| ||| | || ||||||||||    
T  31289375 tcccatgacctgatagcaattgtttgtctcaagtggtaatgatgactctgcttccaggaccaa 31289313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 26824908 - 26824840
Alignment:
Q  31 aattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaa 99  Q
    ||||||| ||||||||| |||||||| ||| | || |||  ||| |||||||||| |||||||||||||    
T  26824908 aattgtttgtctcgagttgtaatgatgactctgctgccattaccgaaccaatcaaatcctccagccaaa 26824840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 26938143 - 26938067
Alignment:
Q  6 tctttcaatcccatgagctgctagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaat 82  Q
    ||||||||||||||||  || |||||| |||| ||||||||||||||  || ||||| || ||| |||||| |||||    
T  26938143 tctttcaatcccatgacatgatagcaaatgtttgtctcgagtggtaacaatgactttgcttccatgaccaagccaat 26938067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 131; Significance: 4e-68; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 6 - 188
Target Start/End: Complemental strand, 35841 - 35659
Alignment:
Q  6 tctttcaatcccatgagctgctagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgt 105  Q
    ||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| | |||| |||||||||||     
T  35841 tctttcaatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttacttccaggaccaaaccaatcaatttctcccgccaaaacctgc 35742  T
Q  106 aattgcttcagctcgtgaacatcatcgagaatcaacaaaaccttctttcggtgaagtctttgctttatgattggaattccctc 188  Q
    |||||||| || |||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  35741 aattgctttagttcgtgaacatcatctagaatcaacagaaccttctttcggtgaagcctttgctttatgattggaattccctc 35659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 28569 - 28379
Alignment:
Q  1 tatgctctttcaatcccatgagctgctagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaa 100  Q
    |||||||||||||||||||||  |||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28569 tatgctctttcaatcccatgacttgctagcaattgtttgtttcgagtggtaatgatcactttacttccaggaccaaaccaatcaagtcctccagccaaaa 28470  T
Q  101 cctgtaattgcttcagctcgtgaacatcatcgagaatcaacaaaaccttctttcggtgaagtctttgctttatgattggaattccctcgtt 191  Q
    || | |||||||| || | ||||||||||||||||||||| | ||| |||||||||||||| |||||||||| || |||||||||||||||    
T  28469 cccgcaattgctttagtttgtgaacatcatcgagaatcaatagaactttctttcggtgaagcctttgctttaagactggaattccctcgtt 28379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 44076 - 43886
Alignment:
Q  1 tatgctctttcaatcccatgagctgctagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaa 100  Q
    |||||||||||||||||||||  |  |||||| |||  |||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||| ||||    
T  44076 tatgctctttcaatcccatgactttttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggaccgaaccaatcaagtcctccagctaaaa 43977  T
Q  101 cctgtaattgcttcagctcgtgaacatcatcgagaatcaacaaaaccttctttcggtgaagtctttgctttatgattggaattccctcgtt 191  Q
    |||| ||||||||||| |||||||||||||||||||| | || |||||| ||||||||||| |||| |||||| |||||||||||||||||    
T  43976 cctgcaattgcttcagttcgtgaacatcatcgagaattagcagaaccttgtttcggtgaagccttttctttattattggaattccctcgtt 43886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 185
Target Start/End: Complemental strand, 40597 - 40451
Alignment:
Q  39 gtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcgagaatc 138  Q
    |||||||||||||||||| ||| | ||  ||||||  ||||||||||| |||||||||||| |||| | ||||||||| || |  | || ||| ||||||    
T  40597 gtctcgagtggtaatgatgactctgctgtcaggactgaaccaatcaagccctccagccaaaccctgcagttgcttcagttcatccatattatctagaatc 40498  T
Q  139 aacaaaaccttctttcggtgaagtctttgctttatgattggaattcc 185  Q
    || | ||| |||||  |||| ||  ||||||||||||| ||||||||    
T  40497 aaaagaacattcttatggtgtaggatttgctttatgataggaattcc 40451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 10 - 188
Target Start/End: Original strand, 5090022 - 5090200
Alignment:
Q  10 tcaatcccatgagctgctagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaatt 109  Q
    ||||||||||||  |  |||||| |||| |||||||||||||||||| ||| | || ||| |||||||||||||| || |||| ||||||||||||| ||    
T  5090022 tcaatcccatgacattttagcaagtgtttgtctcgagtggtaatgatgactctgctgccaagaccaaaccaatcaggttctccggccaaaacctgtagtt 5090121  T
Q  110 gcttcagctcgtgaacatcatcgagaatcaacaaaaccttctttcggtgaagtctttgctttatgattggaattccctc 188  Q
    | ||||| | || || ||||||||||||||| | ||| |||||||  || || |||| |||||||||||||||||||||    
T  5090122 gtttcagtttgtcaatatcatcgagaatcaaaagaactttctttctttgtagccttttctttatgattggaattccctc 5090200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 153
Target Start/End: Original strand, 18723186 - 18723296
Alignment:
Q  43 cgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcgagaatcaaca 142  Q
    |||||||||||||| ||| | || ||||  || ||||||||| |||||||||||||| | || | ||| ||||  | || |||||||||||||||||| |    
T  18723186 cgagtggtaatgataactctgcttccagagccgaaccaatcaggtcctccagccaaagcatgcagttgtttcaaattgtcaacatcatcgagaatcaaaa 18723285  T
Q  143 aaaccttcttt 153  Q
     || |||||||    
T  18723286 gaatcttcttt 18723296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 7828014 - 7827978
Alignment:
Q  62 tactaccaggaccaaaccaatcaagtcctccagccaa 98  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  7828014 tactaccagaaccaaaccaatcacgtcctccagccaa 7827978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 3280770 - 3280591
Alignment:
Q  9 ttcaatcccatgagctgctagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaat 108  Q
    |||||||||||||  || || ||| |||| |||||||||||||||||||||  ||||||||  || |||||||||||| |||||||| || || || |      
T  3280770 ttcaatcccatgacttgataacaagtgtttgtctcgagtggtaatgatcaccctactaccaacactaaaccaatcaagccctccagctaagacttgcacc 3280671  T
Q  109 tgcttcagctcgtgaacatcatcgagaatcaacaaaaccttctttcggtgaagtctttgctttatgattggaattccctc 188  Q
    |||||||  |||| ||| ||||| |||| ||| | |||||| || ||||| || ||||||||||||||||||||||||||    
T  3280670 tgcttcaattcgttaacgtcatcaagaaccaatagaacctttttccggtgtagcctttgctttatgattggaattccctc 3280591  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 17992289 - 17992459
Alignment:
Q  12 aatcccatgagctgctagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgc 111  Q
    ||||||||||  || || ||| |||| |||||||||||||||||| ||| | || ||| |||||| |||| || |  ||||| |||||||||| ||||||    
T  17992289 aatcccatgacatgttaacaaatgtttgtctcgagtggtaatgatgactctgctgccacgaccaagccaaccaggctctccaaccaaaacctgcaattgc 17992388  T
Q  112 ttcagctcgtgaacatcatcgagaatcaacaaaaccttctttcggtgaagtctttgctttatgattggaat 182  Q
    || || | ||  |  |||||||||||||| | ||| |||||| |    || ||||||||||||||||||||    
T  17992389 tttagtttgtcgatgtcatcgagaatcaagagaactttcttttgacatagcctttgctttatgattggaat 17992459  T

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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 6 - 185
Target Start/End: Complemental strand, 26137002 - 26136823
Alignment:
Q  6 tctttcaatcccatgagctgctagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgt 105  Q
    ||||| ||||||||||  || |||||| |||| |||||| ||||||||||| ||| |||| |||||||||| ||||  | |  ||||| ||||||||||     
T  26137002 tcttttaatcccatgacatgatagcaaatgtttgtctcgggtggtaatgatgactctactcccaggaccaagccaactaggctctccaaccaaaacctgc 26136903  T
Q  106 aattgcttcagctcgtgaacatcatcgagaatcaacaaaaccttctttcggtgaagtctttgctttatgattggaattcc 185  Q
    || ||||| |||| || ||| |||||||||||||||||||  |||||| | || || ||||  |||||||||||||||||    
T  26136902 aactgctttagcttgtcaacgtcatcgagaatcaacaaaattttcttttgatgtagcctttcttttatgattggaattcc 26136823  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 40 - 188
Target Start/End: Original strand, 28126777 - 28126925
Alignment:
Q  40 tctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcgagaatca 139  Q
    ||||||||||||||||| ||||| || ||| |||| |||||||||||||||||||||||| ||| ||  |||| ||| | ||  |||||||| |||||||    
T  28126777 tctcgagtggtaatgatgactttgcttccacgaccgaaccaatcaagtcctccagccaaagcctctagctgctccagtttgtcgacatcatcaagaatca 28126876  T
Q  140 acaaaaccttctttcggtgaagtctttgctttatgattggaattccctc 188  Q
    | | || |||||||| |   || ||||| |||||||||| |||||||||    
T  28126877 aaagaatcttctttctgcatagcctttgttttatgattgcaattccctc 28126925  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 154
Target Start/End: Original strand, 267478 - 267556
Alignment:
Q  76 aaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcgagaatcaacaaaaccttctttc 154  Q
    |||||||||||||||||||||||| | || ||||| || |  |||| |||||||||||||||||| | || ||||||||    
T  267478 aaccaatcaagtcctccagccaaagcatgcaattgttttatatcgttaacatcatcgagaatcaaaagaatcttctttc 267556  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 188
Target Start/End: Original strand, 28163472 - 28163626
Alignment:
Q  34 tgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcga 133  Q
    |||| |||||||||||||||||| ||  | || ||| |||| |||||||| ||||||||||||||| |||  |  |||| ||| | ||  |||||||| |    
T  28163472 tgtttgtctcgagtggtaatgatgaccctgcttccacgaccgaaccaatcgagtcctccagccaaagcctccagctgctccagtttgtcgacatcatcaa 28163571  T
Q  134 gaatcaacaaaaccttctttcggtgaagtctttgctttatgattggaattccctc 188  Q
    ||||||| | ||  || ||||  || || ||||| |||||||||| |||||||||    
T  28163572 gaatcaaaagaattttatttctatgtagcctttgttttatgattgtaattccctc 28163626  T

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Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 34 - 185
Target Start/End: Complemental strand, 16691953 - 16691802
Alignment:
Q  34 tgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcga 133  Q
    |||| |||||||||||||||||| ||| |||| |||||||||||||||||  |  ||||| ||| ||| || ||||||||  |||| | |||||||||||    
T  16691953 tgtttgtctcgagtggtaatgatgactctacttccaggaccaaaccaatcgggctctccaaccataacttgcaattgcttttgctcatcaacatcatcga 16691854  T
Q  134 gaatcaacaaaaccttctttcggtgaagtctttgctttatgattggaattcc 185  Q
    ||||||| | |||||| ||| | || || ||||| ||||| |||||||||||    
T  16691853 gaatcaaaagaacctttttttgttgtagcctttgttttattattggaattcc 16691802  T

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Target: scaffold0349 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 34 - 154
Target Start/End: Original strand, 2635 - 2755
Alignment:
Q  34 tgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcga 133  Q
    |||| |||||||||||||||||| ||||| || ||| | || ||||||||| |||||||||||||| | |||| ||||||||  | || ||||||||| |    
T  2635 tgtttgtctcgagtggtaatgatgactttgcttccacggccgaaccaatcaggtcctccagccaaagcatgtagttgcttcatattgtcaacatcatcaa 2734  T
Q  134 gaatcaacaaaaccttctttc 154  Q
    ||||||| | |||||||||||    
T  2735 gaatcaaaagaaccttctttc 2755  T

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Target: scaffold0277 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 153
Target Start/End: Original strand, 3801 - 3927
Alignment:
Q  27 tagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaaca 126  Q
    |||||| |||| |||||||||||||||||| ||  | || ||| | |||||||||||| || |||| |||||| |||||| ||||| ||  |||| ||||    
T  3801 tagcaagtgtttgtctcgagtggtaatgatgaccctgcttccaaggccaaaccaatcaggttctcctgccaaagcctgtagttgctccatatcgtcaaca 3900  T
Q  127 tcatcgagaatcaacaaaaccttcttt 153  Q
    |||||||||||||| | || |||||||    
T  3901 tcatcgagaatcaaaagaatcttcttt 3927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 12771 - 12877
Alignment:
Q  34 tgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcga 133  Q
    |||| |||||||||||||||||| ||  | || ||| | || ||||||||| ||||||| |||||| | |||| ||||||||  |||| |||||||||||    
T  12771 tgtttgtctcgagtggtaatgatgaccctgcttccacggccgaaccaatcaggtcctcctgccaaagcatgtagttgcttcatatcgtcaacatcatcga 12870  T
Q  134 gaatcaa 140  Q
    |||||||    
T  12871 gaatcaa 12877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 29272927 - 29273040
Alignment:
Q  27 tagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaaca 126  Q
    |||||| |||| ||||||||| |||||||| ||||| || ||| | || ||||||||| |||||||||||||| | |||| ||||||||  |  | ||||    
T  29272927 tagcaagtgtttgtctcgagtagtaatgatgactttgcttccacggccgaaccaatcatgtcctccagccaaagcatgtagttgcttcaaattatcaaca 29273026  T
Q  127 tcatcgagaatcaa 140  Q
    ||||||||||||||    
T  29273027 tcatcgagaatcaa 29273040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 16441175 - 16441092
Alignment:
Q  1 tatgctctttcaatcccatgagctgctagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatca 84  Q
    |||| |||||||| |||||||  ||||||||| |||| ||| ||||| |||||||| ||| | |||||||||||| ||||||||    
T  16441175 tatgttctttcaaccccatgacttgctagcaactgtttgtcccgagttgtaatgataactctgctaccaggaccataccaatca 16441092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 140
Target Start/End: Complemental strand, 8573 - 8467
Alignment:
Q  34 tgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatcga 133  Q
    |||| |||||||||||||||||| ||  | || ||| | || ||||||||| ||||||| |||||| | |||| ||||||||  |||| |||||||||||    
T  8573 tgtttgtctcgagtggtaatgatgaccctgcttccacggccgaaccaatcaggtcctcctgccaaagcatgtagttgcttcatatcgtcaacatcatcga 8474  T
Q  134 gaatcaa 140  Q
    |||||||    
T  8473 gaatcaa 8467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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