View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14407_low_2 (Length: 580)
Name: NF14407_low_2
Description: NF14407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14407_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 3e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 33015504 - 33015698
Alignment:
| Q |
13 |
aaatagattacataatatttgcagattttttactttgttggatcgcttagaatgcactgtggttcctaaaggatgaaagctacttctcaactctaatact |
112 |
Q |
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| T |
33015504 |
aaatagattacataatatttgcagattttttactttgttggatcgcttagaatgcactgtggttcctaaaggatgaaagctacttctcaactctaatact |
33015603 |
T |
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| Q |
113 |
atgtttaacaaataagctttgacatgaaataaaacctgttgtttgagttagagcaaaaagaacaagattgaaaatttcacaacagagatagaggggct |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33015604 |
atgtttaacaaataagctttgacatgaaataaaacctgttgtttgagttagagcaaaaagaacaagattgaaaatttc---acagagatagaggggct |
33015698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 66 - 200
Target Start/End: Complemental strand, 33120920 - 33120785
Alignment:
| Q |
66 |
gcactgtggttcctaaaggatgaaagctacttctcaactctaatactatgtttaacaaataagctttgacatgaaataaaacctgttgtttga-gttaga |
164 |
Q |
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||||| ||||||||||| ||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||| ||||| || | | | |
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| T |
33120920 |
gcactttggttcctaaatgatgaaaactacttctcaactctcatactatatttaacaaataagctttgacatgagataaaacctattgttagaggctcaa |
33120821 |
T |
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| Q |
165 |
gcaaaaagaacaagattgaaaatttcacaacagaga |
200 |
Q |
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| T |
33120820 |
gcaagaagaacaatattgaaattttcacaacagaga |
33120785 |
T |
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