View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14407_low_4 (Length: 376)
Name: NF14407_low_4
Description: NF14407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14407_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 14 - 358
Target Start/End: Original strand, 29032405 - 29032749
Alignment:
| Q |
14 |
cacagagcataattattttcaatctttccataccatggaacaagcactaagaactctcaacggaatgcctccaatggaagaaccagaaaaccaccaccac |
113 |
Q |
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| T |
29032405 |
cacagagcataattatttcaaatctttccataccatggaacaagcactaagaactctcaacggaatgcctccaatggaagaacaagacaaccaccaccac |
29032504 |
T |
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| Q |
114 |
cacnnnnnnncttcctcttcctcttccacttctgcaaccaacaaaacaggcgccacggtacgataccgtggagtccgacgccgaccatggggccgttatg |
213 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29032505 |
cacaaaaaaacttcctcttcctcttccacttctgcaaccaacaaaactggcgccacggtacgataccgtggagtccgacgccgaccatggggccgttatg |
29032604 |
T |
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| Q |
214 |
cagccgagataagagacccacattccaaagaacgccgctggctcggaactttcgataccgccgaacaagctgcttgcgcctacgactccgccgctctatc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29032605 |
cagccgagataagagacccacattccaaagaacgccgctggctcggaactttcgataccgccgaacaagctgcttgcgcctacgactccgccgctctatc |
29032704 |
T |
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| Q |
314 |
catgcgcggttccaaagctcgaaccaatttcttctatcccgaaac |
358 |
Q |
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| T |
29032705 |
catgcgcggttccaaagctcgaaccaatttcttctatcccgaaac |
29032749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 177 - 268
Target Start/End: Original strand, 14158570 - 14158661
Alignment:
| Q |
177 |
taccgtggagtccgacgccgaccatggggccgttatgcagccgagataagagacccacattccaaagaacgccgctggctcggaactttcga |
268 |
Q |
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| T |
14158570 |
taccgcggagttcgccgcagaccatggggccgctatgcagctgagataagagaccctcagtccaaagaacgccgctggcttggaaccttcga |
14158661 |
T |
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