View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14407_low_5 (Length: 359)
Name: NF14407_low_5
Description: NF14407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14407_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 49265285 - 49265021
Alignment:
| Q |
1 |
tcaaggtcgttgtccgatgggcggacttaaacaagcagttgctattgctgcaatgtgtgtgcaaacacaagcttctgcaaggcctctcattggtgaaatt |
100 |
Q |
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| T |
49265285 |
tcaaggtcgttgtccaatgggaggacttaaacaagcagttgctattgcggcaatgtgtgtgcaaacacaagcttctgcaaggcctctcattggtgaaatt |
49265186 |
T |
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| Q |
101 |
gtggatgcacttacatacatgaccagaactgactcatcacccaaattgaaaagatctatgatgattgagtgataagagtgatatttcaacatgggaaatg |
200 |
Q |
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| T |
49265185 |
gtggatgcacttacatacatgaccagaactgactcatcacccaaattgaaaagatctatgatgattgagtgttaagagtgatatttcaacatgggaaatg |
49265086 |
T |
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| Q |
201 |
agcatcttagacccaaactctaaatatattacttcattcagctaattaaagaaaattcatgacaa |
265 |
Q |
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| T |
49265085 |
agcatcttagacccaaactctaaatatattacttcattcagctaattaaagaaaattcatgacaa |
49265021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 344
Target Start/End: Complemental strand, 49264971 - 49264937
Alignment:
| Q |
310 |
atactcgcatatgaaccaaggatttatagattcat |
344 |
Q |
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|||||||||||||||| |||||||||||||||||| |
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| T |
49264971 |
atactcgcatatgaactaaggatttatagattcat |
49264937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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