View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14407_low_6 (Length: 330)
Name: NF14407_low_6
Description: NF14407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14407_low_6 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0171 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 36734467 - 36734156
Alignment:
| Q |
19 |
acttgtcacttaccaagatgaaggcttttatgttctccattttcaatttgatttcagagctctcatcttcaagaatatccaataaaatatcaagtagatc |
118 |
Q |
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| T |
36734467 |
acttgtcacttaccaagatgaaggcttttatgttctccattttcaatttgatttcagagctctcatcttcaagaatatccaataaaatatcaagtagatc |
36734368 |
T |
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| Q |
119 |
cttaatttgaccttctcctccaccaacttcctttctcctcctccttacttcttgatgctccttgataatcctctccatcatagaatcaaacctgtcccta |
218 |
Q |
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| T |
36734367 |
cttaatttgaccttctcctccaccaacttcttttctcctcctccttacttcttgatgctccttgataatcctctccatcatagaatcaaacctgtcccta |
36734268 |
T |
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| Q |
219 |
atttcctttaaccctttgctaaacccctggacatcccagttcttaaaaaaccaaataaaatcagaaatattaaacttccccgtaagatgtacagtgtctt |
318 |
Q |
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| T |
36734267 |
atttcctctaaccctttgctaaacccctggacatcccagttcttaaaaaaccaaataaaatcagaaatattaaacttccccgtaagatgtacagtgtctt |
36734168 |
T |
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| Q |
319 |
gcaccaacttcc |
330 |
Q |
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| T |
36734167 |
gcaccaacttcc |
36734156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 330
Target Start/End: Complemental strand, 19053 - 18974
Alignment:
| Q |
251 |
atcccagttcttaaaaaaccaaataaaatcagaaatattaaacttccccgtaagatgtacagtgtcttgcaccaacttcc |
330 |
Q |
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| T |
19053 |
atcccaattcttaaaaaaccaaataaaatccgacaaattaaacctccctgaaagctctacactatcttgcaccatcttcc |
18974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 123
Target Start/End: Complemental strand, 24649 - 24587
Alignment:
| Q |
61 |
tcaatttgatttcagagctctcatcttcaagaatatccaataaaatatcaagtagatccttaa |
123 |
Q |
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| T |
24649 |
tcaattttatttcactgctctcatcttcatgaatttccaacaaaatatcaagcaaatccttaa |
24587 |
T |
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