View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14407_low_8 (Length: 260)
Name: NF14407_low_8
Description: NF14407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14407_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 56 - 244
Target Start/End: Original strand, 49265395 - 49265582
Alignment:
| Q |
56 |
tctagtgtagtagtagagtttattaagtgaggaacttacccattcaacaagactacgctctccttgaggtcgtgtattatcaagagccctacgtcctgaa |
155 |
Q |
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| T |
49265395 |
tctagtgtagtagttta-ttaattaagcgaggaacttacccattcaacaagactacgctctccttgcggtcgtgtattatcaagagccctgcgtcctgaa |
49265493 |
T |
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| Q |
156 |
ataagttcgagcatgaccactccatagctatacacatcagattttatagttagttgtccggtcataagatattcaggggcacaataacc |
244 |
Q |
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| T |
49265494 |
ataagttcgagcatgaccactccatagctatacacatcagatttaatagttagttgtccggtcataagatattcaggggcacaataacc |
49265582 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 52960224 - 52960285
Alignment:
| Q |
183 |
ctatacacatcagattttatagttagttgtccggtcataagatattcaggggcacaataacc |
244 |
Q |
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| T |
52960224 |
ctatatacatctgattttacagttagttgtccagtcatagcatattcaggagcacagtaacc |
52960285 |
T |
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