View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14408_high_3 (Length: 378)
Name: NF14408_high_3
Description: NF14408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14408_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 2245278 - 2244925
Alignment:
| Q |
1 |
ttgctaacaaaccaatatacaaaacaagaatgccaccaaataaaatcatgaacaaaattatgagaagaaaataacacatgaatgcatagtgtgtctctcc |
100 |
Q |
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| T |
2245278 |
ttgctaacaaaccgatatacaaacca-gaatgccaccaaataaaatcatgaacaaaattatgagaagaaaataacacatgaatgcatagtgtgtctctcc |
2245180 |
T |
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| Q |
101 |
ttgatcccctttacgaggaagatcatgaagatgtttggaataaagtcctttggtcgtaaaaatgataaacaaaaacaaaccaaagatgattctagcagcc |
200 |
Q |
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| T |
2245179 |
ttgatcccctttacgaggaagatcatgaagatgtttggaataaagtcttttggtcgtaaaaatgataaacaaaaacaaaccaaagatgattctagcagcc |
2245080 |
T |
|
| Q |
201 |
aatacagtcttaccggattcattccatctctcggtgccgccaccatgtatggcagcaagagacaagagctccggcgttacatcatctccccaagcaaccg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2245079 |
aatacagtcttaccggattcattccatctctcggtgccgccaccatgtatggcagcaagagacaagagctccggcgttacatcatctccccaagcaaccg |
2244980 |
T |
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| Q |
301 |
ttattataggtaagatttattcaactgtcaataacaactcatttttctatttcaa |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2244979 |
ttattataggtaagatttattcaactgtcaataacaactcatttttctatttcaa |
2244925 |
T |
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