View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14408_high_4 (Length: 378)
Name: NF14408_high_4
Description: NF14408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14408_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 280
Target Start/End: Original strand, 45565060 - 45565321
Alignment:
| Q |
19 |
aggatctttagtttcttctacttccaattcactgatgattgtaaaaggtgtccgaggaataaaatatattttacctgtacaagcaagttcctccacatga |
118 |
Q |
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| T |
45565060 |
aggatctttagtttcttctacttccaattcactgatgattgtaaaaggtgtctgaggaataaaatatattttacctgtacaagcaagttcctccacatga |
45565159 |
T |
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| Q |
119 |
tatttgttataagaggttccctgcaagccaaacgtaagatcatactaaaattgcgcaaataaaggctaattcaaagcccaaatcaactataagctcagtc |
218 |
Q |
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| T |
45565160 |
tatttgttataagaggttccctgcaagccaaacgtaagatcatactaaaattgcgcaaataaaggctaattcaaagcccaaatcaactataagctcagtc |
45565259 |
T |
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| Q |
219 |
agtagtgcctctattatatagaaaatgccatcattttaaattcagtcgattgaataaacgta |
280 |
Q |
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| T |
45565260 |
agtagtgcctctattatatagaaaatgccatccttttaaattcagtcgattgaataaacgta |
45565321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 280 - 369
Target Start/End: Original strand, 45565382 - 45565471
Alignment:
| Q |
280 |
agatgaagacacaagggtgcacggtgtaaactcagttatcacatgctttattggtatgatgaagaacagtgagttcctttcttctcactc |
369 |
Q |
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| T |
45565382 |
agatgaagacacaagggtgcacggtgtaaactcagttatcacatgctttattggtatgatgaagaacagtgagttcctttcttctcactc |
45565471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 141
Target Start/End: Complemental strand, 16695439 - 16695389
Alignment:
| Q |
91 |
acctgtacaagcaagttcctccacatgatatttgttataagaggttccctg |
141 |
Q |
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| T |
16695439 |
acctgtatcagcaaattcctccacataatatttgttatgagaggttccctg |
16695389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 1448118 - 1448062
Alignment:
| Q |
85 |
tattttacctgtacaagcaagttcctccacatgatatttgttataagaggttccctg |
141 |
Q |
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| T |
1448118 |
tattttacctgtacgatcaagtttctccacatgatatttgtaataagaggttccctg |
1448062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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