View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14408_low_6 (Length: 374)
Name: NF14408_low_6
Description: NF14408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14408_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 13 - 359
Target Start/End: Complemental strand, 41546038 - 41545692
Alignment:
| Q |
13 |
attatatcttcaattagtagagtcatgttgcggtaagaagaaccaccttcttctattgcttcccttgccatgtcagcatattttctagctcttgccctaa |
112 |
Q |
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| T |
41546038 |
attatatcttcaattagtagagtcatgttgcggtaagaagaaccaccttcttctattgcttcccttgccatgtcagcatattttctagctcttcccctaa |
41545939 |
T |
|
| Q |
113 |
tcttttccttttcttcaccctcacccattacattctcaatagcatctctaacattttctctcttaacaacaacgcaacacttttcttcctctcctaaatg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41545938 |
tcttttccttttcttcaccctcacccattacattctcaatagcatctctaacattttctctcttaacaacaacgcaacacttttcttcctctcctaaatg |
41545839 |
T |
|
| Q |
213 |
cacagcactttgagctcccacactcacaccattcttcacaacttgcaccacaactttctcattataaaactgttcagcaaacatgggaaatgttactaaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41545838 |
cacagcactttgagctcccacactcacaccattcttcacaacttgcaccacaactttctcattataaaactgttcagcaaacatgggaaatgttactaaa |
41545739 |
T |
|
| Q |
313 |
ggcaccccacaagaaatcccttccaatgttgaattccatccacaatg |
359 |
Q |
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| T |
41545738 |
ggcaccccacaagaaatcccttccaatgttgaattccatccacaatg |
41545692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 268 - 359
Target Start/End: Original strand, 27224103 - 27224194
Alignment:
| Q |
268 |
ttctcattataaaactgttcagcaaacatgggaaatgttactaaaggcaccccacaagaaatcccttccaatgttgaattccatccacaatg |
359 |
Q |
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| T |
27224103 |
ttctcattgaaaaattgatcagcaaacataggatatgttactaatggcaccccaccacaaataccttccaatgttgaattccaaccacaatg |
27224194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 27223865 - 27223930
Alignment:
| Q |
36 |
catgttgcggtaagaagaaccaccttcttctattgcttcccttgccatgtcagcatattttctagc |
101 |
Q |
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| T |
27223865 |
catgttgatgtaagaagatccacctttttcaattgctttctttgccatgtcagcatacttcctagc |
27223930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 359
Target Start/End: Original strand, 20156715 - 20156878
Alignment:
| Q |
196 |
tcttcctctcctaaatgcacagcactttgagctcccacactcacaccattcttcacaacttgcaccacaactttctcattataaaactgttcagcaaaca |
295 |
Q |
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||||| ||||| |||||||||||| ||| ||||||| ||||||||| ||| | ||||| || || | ||||||||||||||| || |||| ||||| |
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| T |
20156715 |
tcttcatctccaaaatgcacagcattttctactcccaccctcacaccagtctcaatcacttgtacaaccaatttctcattataaaattgatcagaaaaca |
20156814 |
T |
|
| Q |
296 |
tgggaaatgttactaaaggcaccccacaagaaatcccttccaatgttgaattccatccacaatg |
359 |
Q |
| |
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| |||||||||| || || || ||| | | || |||| ||||||||||||||||||||||| |
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| T |
20156815 |
taggaaatgttatcaatggtacaccagcacatatagcttctaatgttgaattccatccacaatg |
20156878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 359
Target Start/End: Original strand, 33396746 - 33396774
Alignment:
| Q |
331 |
ccttccaatgttgaattccatccacaatg |
359 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
33396746 |
ccttccaatgttgaattccatccacaatg |
33396774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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