View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14408_low_7 (Length: 363)

Name: NF14408_low_7
Description: NF14408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14408_low_7
NF14408_low_7
[»] chr7 (10 HSPs)
chr7 (1-305)||(12419644-12419948)
chr7 (1-248)||(7398156-7398404)
chr7 (2-245)||(27237573-27237820)
chr7 (2-129)||(23020632-23020757)
chr7 (2-129)||(26917832-26917957)
chr7 (1-129)||(23858901-23859026)
chr7 (14-129)||(20153030-20153145)
chr7 (146-218)||(38971140-38971212)
chr7 (137-245)||(36903588-36903695)
chr7 (145-245)||(9021962-9022063)
[»] chr2 (11 HSPs)
chr2 (14-245)||(11952767-11953009)
chr2 (1-248)||(21665850-21666099)
chr2 (1-245)||(29694087-29694336)
chr2 (14-161)||(16227529-16227683)
chr2 (14-106)||(13800706-13800797)
chr2 (14-236)||(24035706-24035923)
chr2 (96-244)||(12134275-12134426)
chr2 (2-67)||(37182558-37182621)
chr2 (75-162)||(37622543-37622639)
chr2 (14-162)||(38400587-38400739)
chr2 (2-53)||(11912909-11912958)
[»] chr5 (13 HSPs)
chr5 (1-245)||(11242465-11242714)
chr5 (14-228)||(2024798-2025019)
chr5 (14-242)||(10543392-10543624)
chr5 (41-245)||(15639160-15639369)
chr5 (14-160)||(2411882-2412031)
chr5 (42-129)||(34307320-34307407)
chr5 (14-129)||(26719054-26719169)
chr5 (14-129)||(26988798-26988913)
chr5 (1-129)||(40794472-40794598)
chr5 (14-104)||(24395590-24395680)
chr5 (14-246)||(34425609-34425845)
chr5 (14-67)||(14318542-14318595)
chr5 (180-248)||(34307416-34307484)
[»] chr1 (4 HSPs)
chr1 (1-245)||(39134872-39135125)
chr1 (25-129)||(10926115-10926219)
chr1 (14-157)||(26803758-26803902)
chr1 (133-218)||(50146068-50146154)
[»] chr8 (12 HSPs)
chr8 (14-243)||(34048868-34049103)
chr8 (1-126)||(15167563-15167686)
chr8 (1-162)||(15078548-15078713)
chr8 (15-154)||(8646001-8646141)
chr8 (14-101)||(38009297-38009384)
chr8 (179-242)||(7944763-7944826)
chr8 (179-245)||(25562010-25562076)
chr8 (14-67)||(41677334-41677387)
chr8 (188-250)||(5973367-5973429)
chr8 (179-245)||(38009479-38009545)
chr8 (1-53)||(25561656-25561706)
chr8 (201-245)||(8645917-8645961)
[»] scaffold1320 (1 HSPs)
scaffold1320 (1-162)||(1144-1309)
[»] chr4 (12 HSPs)
chr4 (2-240)||(15734807-15735053)
chr4 (2-157)||(37746871-37747028)
chr4 (14-129)||(52468118-52468233)
chr4 (22-242)||(27111747-27111970)
chr4 (2-129)||(36118607-36118732)
chr4 (2-162)||(40217020-40217187)
chr4 (78-250)||(4168097-4168268)
chr4 (14-60)||(36363030-36363076)
chr4 (1-114)||(2135467-2135578)
chr4 (75-129)||(39329625-39329679)
chr4 (88-129)||(24396769-24396810)
chr4 (76-129)||(50677231-50677288)
[»] chr3 (5 HSPs)
chr3 (14-238)||(26279254-26279485)
chr3 (14-114)||(42453257-42453357)
chr3 (14-123)||(52374500-52374603)
chr3 (179-244)||(23641460-23641525)
chr3 (14-67)||(28689521-28689574)
[»] chr6 (4 HSPs)
chr6 (22-242)||(2477752-2477976)
chr6 (2-129)||(20611620-20611745)
chr6 (171-242)||(20611510-20611582)
chr6 (139-251)||(4036783-4036896)
[»] scaffold0097 (1 HSPs)
scaffold0097 (136-244)||(38798-38907)
[»] scaffold0007 (2 HSPs)
scaffold0007 (14-159)||(231020-231167)
scaffold0007 (179-246)||(232544-232611)
[»] scaffold0018 (1 HSPs)
scaffold0018 (14-114)||(173671-173771)
[»] scaffold1590 (1 HSPs)
scaffold1590 (179-248)||(432-501)


Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 12419644 - 12419948
Alignment:
Q  1 ggacccaattctataataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  12419644 ggacccaattctataataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagaaaaaaaggaaagtccgatggagtgatggtgat 12419743  T
Q  101 ggaacgcatggtatcagagagaaaaagaaattttgtttttagtagggtagtacttagtagtattaccggcctatattattttttaggcccataccttggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12419744 ggaacgcatggtatcagagagaaaaagaaattttgtttttagtagggtagtacttagtagtattaccggcctatatttttttttaggcccataccttggt 12419843  T
Q  201 gaggcccagttccattgaactccttgcagaccccaaggtccggccttgctctacatataactcacaaatcagagcaaagagttctctaaatttttagaat 300  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12419844 gaggcccggttccattgaactccttgcagaccccaaggtccggccctgctctacatataactcacaaatcagagcaaagagttctctaaatttttagaat 12419943  T
Q  301 ttctt 305  Q
    |||||    
T  12419944 ttctt 12419948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 7398404 - 7398156
Alignment:
Q  1 ggacccaattctataataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgat 100  Q
    |||||||||||||  |||||||||||||||||||||  | ||| |||||||||||||||||| || |       ||| ||||||||||||||||| ||||    
T  7398404 ggacccaattcta--ataggcctaaaacaagacaacaaaagagcaaaaggaaatcaaatcggggatgaagaaaaggagagtccgatggagtgatgttgat 7398307  T
Q  101 ggaacgcatggtatcagagagaaa---aagaaattttgtttttagtagggtagtacttagtagtattaccggcctatattattt-tttaggcccatacct 196  Q
    ||||||| |||||| |||||||||   || ||   || |||||||  |||||||||||||||||| ||| || |||||   ||| |||||||||||||||    
T  7398306 ggaacgcgtggtattagagagaaagaaaataagaattttttttagg-gggtagtacttagtagtactactgggctataaattttatttaggcccatacct 7398208  T
Q  197 tggtgaggcccagttccattgaactccttgcagaccccaaggtccggccttg 248  Q
    ||| ||||| ||| |||||||| ||| ||||| ||||||||||||| |||||    
T  7398207 tggggaggctcagctccattgagctcgttgcacaccccaaggtccgaccttg 7398156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 2 - 245
Target Start/End: Original strand, 27237573 - 27237820
Alignment:
Q  2 gacccaattctataataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatg 101  Q
    ||||||||||||  |||||||||||||||||||||  | ||| |||||||||||||||||| ||||       |||||||||||||||||||||||||||    
T  27237573 gacccaattcta--ataggcctaaaacaagacaacaaaagagaaaaaggaaatcaaatcggggaagaagaaaaggaaagtccgatggagtgatggtgatg 27237670  T
Q  102 gaacgcatggtatcagagagaaaaagaa-----attttgtttttagtagggtagtacttagtagtattaccggcctata-ttattttttaggcccatacc 195  Q
    |||||| |||||||||||||| | ||||     | ||| |||||||| |||||||||||| ||||  ||  |   |||| || |||||||| ||||||||    
T  27237671 gaacgcgtggtatcagagagatagagaaaaattaatttttttttagtggggtagtacttattagtgctattgagttatagtttttttttagacccatacc 27237770  T
Q  196 ttggtgaggcccagttccattgaactccttgcagaccccaaggtccggcc 245  Q
    |  | ||||||||  |||||||| ||| ||||| ||||||| ||||||||    
T  27237771 tcagggaggcccaactccattgagctctttgcacaccccaaagtccggcc 27237820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 129
Target Start/End: Original strand, 23020632 - 23020757
Alignment:
Q  2 gacccaattctataataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatg 101  Q
    ||||||||||||  ||||| |||||||||||||||  | |||||||| ||||||||||||| ||||       ||||||||||||||| |||||||||||    
T  23020632 gacccaattcta--ataggtctaaaacaagacaacaaaagaggaaaaagaaatcaaatcggggaagaagaaaaggaaagtccgatggaatgatggtgatg 23020729  T
Q  102 gaacgcatggtatcagagagaaaaagaa 129  Q
    |||||| |||||||||||||||| ||||    
T  23020730 gaacgcgtggtatcagagagaaagagaa 23020757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 2 - 129
Target Start/End: Original strand, 26917832 - 26917957
Alignment:
Q  2 gacccaattctataataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatg 101  Q
    ||||||||||||  ||| ||||||||||||||||| || |||||||| ||||||||||||| ||||       | |||||| ||||||||||||||||||    
T  26917832 gacccaattcta--ataagcctaaaacaagacaacagaagaggaaaatgaaatcaaatcggggaagatgaaaagtaaagtctgatggagtgatggtgatg 26917929  T
Q  102 gaacgcatggtatcagagagaaaaagaa 129  Q
     ||| |||||||||||| ||||| ||||    
T  26917930 aaacacatggtatcagatagaaagagaa 26917957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 23859026 - 23858901
Alignment:
Q  1 ggacccaattctataataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgat 100  Q
    |||||||||||||  ||||||||||||||||| ||| || |||||||| |||||||||| || ||||       |||| ||| |||| ||||||||||||    
T  23859026 ggacccaattcta--ataggcctaaaacaagataacggaagaggaaaatgaaatcaaattggggaagaagaaaaggaa-gtctgatgcagtgatggtgat 23858930  T
Q  101 ggaacgcatggtatcagagagaaaaagaa 129  Q
    ||||||| |||||||||||||||| ||||    
T  23858929 ggaacgcgtggtatcagagagaaagagaa 23858901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 129
Target Start/End: Complemental strand, 20153145 - 20153030
Alignment:
Q  14 taataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatggaacgcatggta 113  Q
    |||||||||||||||||||||||  | ||| |||| ||||||||||||| ||||         ||||||| ||||||||||||||||||||||  |||||    
T  20153145 taataggcctaaaacaagacaacatatgagaaaaaagaaatcaaatcggggaagaagaaaaacaaagtccaatggagtgatggtgatggaacgtgtggta 20153046  T
Q  114 tcagagagaaaaagaa 129  Q
    ||||||||||| ||||    
T  20153045 tcagagagaaagagaa 20153030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 38971212 - 38971140
Alignment:
Q  146 ggtagtacttagtagtattaccggcctatattattttttaggcccataccttggtgaggcccagttccattga 218  Q
    ||||||||||||||||||||| || ||||||| ||||||||||| |||| |||| ||| ||||||||||||||    
T  38971212 ggtagtacttagtagtattactgggctatatttttttttaggccaatactttggggagacccagttccattga 38971140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 245
Target Start/End: Original strand, 36903588 - 36903695
Alignment:
Q  137 ttttagtagggtagtacttagtagtattaccggcctat-attattttttaggcccataccttggtgaggcccagttccattgaactccttgcagacccca 235  Q
    |||||||||||||||||||||||||| ||| || |||| |||  ||||||| |  ||||||||| ||||||||| || ||||| ||| ||||  ||||||    
T  36903588 ttttagtagggtagtacttagtagtactactggactataatttatttttagacttataccttggagaggcccagctcaattgagctctttgc--acccca 36903685  T
Q  236 aggtccggcc 245  Q
    || |||||||    
T  36903686 agatccggcc 36903695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 245
Target Start/End: Original strand, 9021962 - 9022063
Alignment:
Q  145 gggtagtacttagtagtattaccggcctat-attattttttaggcccataccttggtgaggcccagttccattgaactccttgcagaccccaaggtccgg 243  Q
    |||||||||||||||||| ||| || |||| ||| |||||||| |||||| || || ||||||||| |||| ||| ||  ||| | |||||||||| |||    
T  9021962 gggtagtacttagtagtactactgggctataatttttttttagacccataactgggggaggcccagctccactgagctgtttgtaaaccccaaggttcgg 9022061  T
Q  244 cc 245  Q
    ||    
T  9022062 cc 9022063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 8e-49; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 14 - 245
Target Start/End: Original strand, 11952767 - 11953009
Alignment:
Q  14 taataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatggaacgcatggta 113  Q
    ||||||||||||||||||||||  || |||||||||||||||||||||| ||||       |||||| ||| |||||||||||||||||||||| |||||    
T  11952767 taataggcctaaaacaagacaatggaagaggaaaaggaaatcaaatcggggaagaagaaaaggaaagcccggtggagtgatggtgatggaacgcgtggta 11952866  T
Q  114 tcagagagaaa-------aagaaattttgtttttagtagggtagtacttagtagtattaccggcctata----ttattttttaggcccataccttggtga 202  Q
     ||||||||||       ||||| ||||||||||||| | |||||||||||||||| ||| || |||||    |||||||| |||| |||||||||| ||    
T  11952867 ccagagagaaagagaataaagaatttttgtttttagtggagtagtacttagtagtactacagggctataaattttatttttgaggctcataccttgggga 11952966  T
Q  203 ggcccagttccattgaactccttgcagaccccaaggtccggcc 245  Q
    |||||||||||||||| ||||||||| |||||||||| |||||    
T  11952967 ggcccagttccattgagctccttgcacaccccaaggttcggcc 11953009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 21665850 - 21666099
Alignment:
Q  1 ggacccaattctataataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgat 100  Q
    |||||||||||||  |||| | |||||||||||||| || ||||||||||||||||||| || ||||       |||||||| |||||||||||| ||||    
T  21665850 ggacccaattcta--atagacataaaacaagacaacagatgaggaaaaggaaatcaaattggggaagaagaaaaggaaagtctgatggagtgatgatgat 21665947  T
Q  101 ggaacgcatggtatcagagagaaaaagaa-----attttgtttttagtagggtagtacttagtagtattaccggcctatattattttttaggcccatacc 195  Q
    ||||||| |||||||| ||||||| ||||     | ||| |||||||| ||||||| |||||||||| | | |  |||||  |   ||||||||||||||    
T  21665948 ggaacgcgtggtatcaaagagaaagagaataaggaattt-tttttagtggggtagtgcttagtagtactgctgagctataaaaaaatttaggcccatacc 21666046  T
Q  196 ttggtgaggcccagttccattgaactccttgcagaccccaaggtccggccttg 248  Q
    |||| |||||||||||||||||| ||||||||| |||||||||||||||||||    
T  21666047 ttggggaggcccagttccattgagctccttgcacaccccaaggtccggccttg 21666099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 29694336 - 29694087
Alignment:
Q  1 ggacccaattctataataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgat 100  Q
    |||||||||||||  ||||| ||||||||||||||| || |||||||| ||||||||||||| ||||       ||||| |  |||  ||||||||||||    
T  29694336 ggacccaattcta--ataggtctaaaacaagacaacagaagaggaaaaagaaatcaaatcggggaagaagaaaaggaaaatttgataaagtgatggtgat 29694239  T
Q  101 ggaacgcatggtatcagagagaa-------aaagaaattttgtttttagtagggtagtacttagtagtattaccggcctatattattttttaggcccata 193  Q
    ||||||| |||||||||| ||||       || |||||||  | |||||  | |||||||||||||||| ||  || ||||| | |||||||| ||||||    
T  29694238 ggaacgcgtggtatcagatagaaggagaataaggaaatttattgtttagcggagtagtacttagtagtactagtgggctataattttttttagacccata 29694139  T
Q  194 ccttggtgaggcccagttccattgaactccttgcagaccccaaggtccggcc 245  Q
    ||||   ||||||||| |||||||| ||| ||||| |||||||||| |||||    
T  29694138 ccttaaggaggcccagctccattgagctctttgcacaccccaaggtgcggcc 29694087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 161
Target Start/End: Original strand, 16227529 - 16227683
Alignment:
Q  14 taataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatggaacgcatggta 113  Q
    |||||| | ||||||||||||||  | |||||||| ||||||||||||| ||||       |||||| |||||||||||||||||||| ||||| |||||    
T  16227529 taatagacataaaacaagacaacaaaagaggaaaaagaaatcaaatcggggaagaagaaaaggaaaggccgatggagtgatggtgatgaaacgcgtggta 16227628  T
Q  114 tcagagagaaa------aagaaa-ttttgtttttagtagggtagtacttagtagt 161  Q
    |||||||||||      |||||| ||||||||||||| || ||||||||||||||    
T  16227629 tcagagagaaagagaataagaaatttttgtttttagtgggatagtacttagtagt 16227683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 13800706 - 13800797
Alignment:
Q  14 taataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatggaacg 106  Q
    ||||||||||||| ||||||||| || |||||||| ||||||||||||||||||        |||||||||||||||||||||||||||||||    
T  13800706 taataggcctaaa-caagacaacagaagaggaaaatgaaatcaaatcggagaagaagaaaatgaaagtccgatggagtgatggtgatggaacg 13800797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 24035706 - 24035923
Alignment:
Q  14 taataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatggaacgcatggta 113  Q
    |||||| |||||||||||||||| || |||||||||||||||||||| | ||||        |||| | |||||||||||||||||| |||||| ||| |    
T  24035706 taatagacctaaaacaagacaacagaagaggaaaaggaaatcaaatcagggaagaagaaaatgaaatttcgatggagtgatggtgatcgaacgcgtggca 24035805  T
Q  114 tcagagagaaa---aagaaattttgtttttagtagggtagtacttagtagtattaccggcctata--ttattttttaggcccataccttggtgaggccca 208  Q
    |||||||||||   || ||   || |||||| | ||||||||||       |||   || |||||  ||||||||||||| || ||||||| |||||||     
T  24035806 tcagagagaaagataataaggattttttttaatggggtagtact-------att---gggctataatttattttttaggctcacaccttggggaggcccg 24035895  T
Q  209 gttccattgaactccttgcagaccccaa 236  Q
    |||||||||| ||||||||| |||||||    
T  24035896 gttccattgagctccttgcacaccccaa 24035923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 244
Target Start/End: Original strand, 12134275 - 12134426
Alignment:
Q  96 gtgatggaacgcatggtatcagagagaaa-aagaa--attttgtttttagtagggtagtacttagtagtattaccggcctatattattttttaggcccat 192  Q
    |||||||||| | | |||||||||||||| || ||  ||||| |||||| |||| ||||||||||||||| ||  || ||||| | ||||||  | ||||    
T  12134275 gtgatggaacacgtagtatcagagagaaagaataaggattttttttttaataggatagtacttagtagtactattgggctataattttttttgaggccat 12134374  T
Q  193 accttggtgaggcccagttccattgaactccttgcagaccccaaggtccggc 244  Q
    ||||||  ||||||| |||||||||| || |||||| ||||||| |||||||    
T  12134375 accttgaagaggcccggttccattgaccttcttgcacaccccaaagtccggc 12134426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 37182621 - 37182558
Alignment:
Q  2 gacccaattctataataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaag 67  Q
    ||||||||||||  ||||||||||||||||||||  || |||||||||||||||||||||| ||||    
T  37182621 gacccaattcta--ataggcctaaaacaagacaatagaagaggaaaaggaaatcaaatcggggaag 37182558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 162
Target Start/End: Original strand, 37622543 - 37622639
Alignment:
Q  75 ggaaagtccgatggagtgatggtgatggaacgcatggtatcagagagaaa------aagaaattttg---tttttagtagggtagtacttagtagta 162  Q
    |||||||| |||||||||||| ||||||||||| |||||| |||||||||      |||||| ||||   |||||||| ||||||||||||||||||    
T  37622543 ggaaagtctgatggagtgatgatgatggaacgcgtggtatgagagagaaagataataagaaaatttgttttttttagtggggtagtacttagtagta 37622639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 162
Target Start/End: Complemental strand, 38400739 - 38400587
Alignment:
Q  14 taataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatggaacgcatggta 113  Q
    ||||||||||||||||||||||| ||  |||||||| ||||||||| || ||||        ||||||  ||||||||||  ||||||||||   |||||    
T  38400739 taataggcctaaaacaagacaacagaacaggaaaagaaaatcaaattggggaagaagaaaacgaaagtttgatggagtgacagtgatggaacatgtggta 38400640  T
Q  114 tcag------agagaaaaagaaattttgtttttagtagggtagtacttagtagta 162  Q
    ||||      |||||| ||| |||||||  |||||| ||||||||||||||||||    
T  38400639 tcagaaagaaagagaataaggaattttg--tttagtggggtagtacttagtagta 38400587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 11912909 - 11912958
Alignment:
Q  2 gacccaattctataataggcctaaaacaagacaactgacgaggaaaaggaaa 53  Q
    ||||||||||||  |||||||||||||||||||||  | |||||||||||||    
T  11912909 gacccaattcta--ataggcctaaaacaagacaacaaaagaggaaaaggaaa 11912958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 11242465 - 11242714
Alignment:
Q  1 ggacccaattctataataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgat 100  Q
    |||||||||||||  |||||| |||||||| ||||  || ||||||||||||||| |||||| ||||       |||||||||  |||||||||| ||||    
T  11242465 ggacccaattcta--ataggcataaaacaaaacaagagaagaggaaaaggaaatcgaatcggggaagaagaaaaggaaagtccattggagtgatgatgat 11242562  T
Q  101 ggaacgcatggtatcagagagaaa-----aagaaattttgttttta--gtagggtagtacttagtagtattaccggcctatattattttttaggcccata 193  Q
    ||||||| |||||| |||||||||     ||||| |||||||||||  || ||||||||||||| |||| ||| ||  |||||| |||||||||||||||    
T  11242563 ggaacgcgtggtatgagagagaaagaataaagaatttttgtttttatagtggggtagtacttagcagtactactgggttatatttttttttaggcccata 11242662  T
Q  194 ccttggtgaggcccagttccattgaactccttgcagaccccaaggtccggcc 245  Q
    |||||| |||||| ||||||||||||||||||||| ||| ||||||||||||    
T  11242663 ccttggagaggccaagttccattgaactccttgcacacctcaaggtccggcc 11242714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 2024798 - 2025019
Alignment:
Q  14 taataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatggaacgcatggta 113  Q
    ||||| |||||||||||||||||  | |||||||||||||||||||||| ||||       |||||||| ||||||||||||||||||||||||  ||||    
T  2024798 taatatgcctaaaacaagacaacataagaggaaaaggaaatcaaatcggggaagaagaaaaggaaagtcagatggagtgatggtgatggaacgcgcggta 2024897  T
Q  114 tcagagagaa-------aaagaaattttgtttttagtagggtagtacttagtagtattaccggcctatattattttttaggcccataccttggtgaggcc 206  Q
    ||||||||||       || ||| ||||||||||||| |||||||||||||||||| ||| || ||||| | |||||||| |||||||||||| |||||     
T  2024898 tcagagagaaagagaataaggaatttttgtttttagtggggtagtacttagtagtactactgggctataattttttttagacccataccttggggaggcg 2024997  T
Q  207 cagttccattgaactccttgca 228  Q
    |||||| ||||| |||||||||    
T  2024998 cagttctattgagctccttgca 2025019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 10543624 - 10543392
Alignment:
Q  14 taataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatggaacgcatggta 113  Q
    |||||||||||||| ||||||||  | ||||||||||||||||||||||  |||       ||||||||||| ||||||||| |||||||||||||||||    
T  10543624 taataggcctaaaataagacaacataagaggaaaaggaaatcaaatcgggaaagaataaaaggaaagtccgacggagtgatgatgatggaacgcatggta 10543525  T
Q  114 tcagagagaaaaaga--aattttgtttttagtagggtagtacttagtagtattaccggcctata--ttattttttaggcccataccttggtgaggcccag 209  Q
    || |||||||| |||  || ||| ||||||||||||||||| ||||||||| |||  | |||||  |||||||| | || |||||||||  |||||||      
T  10543524 tccgagagaaagagaataagtttttttttagtagggtagtatttagtagtactactaggctataatttatttttgaagctcataccttgaggaggcccga 10543425  T
Q  210 ttccattgaactccttgcagaccccaaggtccg 242  Q
    ||| ||||| ||||||||| |||| || |||||    
T  10543424 ttctattgagctccttgcacaccctaaagtccg 10543392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 41 - 245
Target Start/End: Complemental strand, 15639369 - 15639160
Alignment:
Q  41 gaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatggaacgcatggtatcagagagaaaaagaaa---ttttgtt 137  Q
    |||||||||||||||||||||| ||||       ||||| | |||  |||||||||||||||||||  |||||||||||||||| ||||    |  | ||    
T  15639369 gaggaaaaggaaatcaaatcggggaagaagaaagggaaaattcgacagagtgatggtgatggaacgtgtggtatcagagagaaagagaataagtaatttt 15639270  T
Q  138 tttagtagggtagtacttagtagtattaccggcctata--ttattttttaggcccataccttggtgaggcccagttccattgaactccttgcagacccca 235  Q
    |||||| |||||||||||||||||| ||| || |||||  || ||||||||||||||||||||| |||  ||||||||||||| ||||||||| ||| ||    
T  15639269 tttagtggggtagtacttagtagtactactggactataattttttttttaggcccataccttggggagctccagttccattgagctccttgcacacctca 15639170  T
Q  236 aggtccggcc 245  Q
    |||| |||||    
T  15639169 aggtacggcc 15639160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 2412031 - 2411882
Alignment:
Q  14 taataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatggaacgcatggta 113  Q
    |||||||||||||||||||||||  | ||||||||||||||||||| || ||||       |||||||| |||||||||||||||||||||| | |||||    
T  2412031 taataggcctaaaacaagacaacataagaggaaaaggaaatcaaattggggaagaagaaaaggaaagtctgatggagtgatggtgatggaacacgtggta 2411932  T
Q  114 tcagagagaaaaaga--aat-tttgtttttagtagggtagtacttagtag 160  Q
    ||| ||||||| |||  |||  || |||||||| ||||||||||||||||    
T  2411931 tcaaagagaaagagaataatgattttttttagtggggtagtacttagtag 2411882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 34307320 - 34307407
Alignment:
Q  42 aggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatggaacgcatggtatcagagagaaaaagaa 129  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||   |||||||||||||||| ||||    
T  34307320 aggaaaaggaaatcaaatcggagaagaagaaaaggaaagtccgatggagtgatggtgatggaacatgtggtatcagagagaaagagaa 34307407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 26719054 - 26719169
Alignment:
Q  14 taataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatggaacgcatggta 113  Q
    ||||||||||||||| | ||||| || |||||||| ||||||||||| |  |||       ||||||| ||||| ||||||||||||||||||| |||||    
T  26719054 taataggcctaaaactaaacaacagaagaggaaaatgaaatcaaatcaggaaagaagaaaaggaaagttcgatgcagtgatggtgatggaacgcgtggta 26719153  T
Q  114 tcagagagaaaaagaa 129  Q
    ||||||||||| ||||    
T  26719154 tcagagagaaagagaa 26719169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 26988798 - 26988913
Alignment:
Q  14 taataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatggaacgcatggta 113  Q
    ||||||||||||||| | ||||| || |||||||| ||||||||||| |  |||       ||||||| ||||| ||||||||||||||||||| |||||    
T  26988798 taataggcctaaaactaaacaacagaagaggaaaatgaaatcaaatcaggaaagaagaaaaggaaagttcgatgcagtgatggtgatggaacgcgtggta 26988897  T
Q  114 tcagagagaaaaagaa 129  Q
    ||||||||||| ||||    
T  26988898 tcagagagaaagagaa 26988913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 40794472 - 40794598
Alignment:
Q  1 ggacccaattctataataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgat 100  Q
    |||||||||||||  ||| |||||||||||||||||  | |||||||| ||||||||||| | ||||       |||||||  |||||| ||||||| ||    
T  40794472 ggacccaattcta--ataagcctaaaacaagacaacaaaagaggaaaaagaaatcaaatccgggaagaagaaaaggaaagtttgatggaatgatggtaat 40794569  T
Q  101 ggaacgcatggtatcagagagaaaaagaa 129  Q
    ||||||| |||||||| ||||||| ||||    
T  40794570 ggaacgcgtggtatcaaagagaaagagaa 40794598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 24395680 - 24395590
Alignment:
Q  14 taataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatggaa 104  Q
    |||||||  ||||||||| ||||  | |||||||||||||||||||||| ||||       |||||||| |||||||||||||||||||||    
T  24395680 taataggtataaaacaaggcaacataagaggaaaaggaaatcaaatcggggaagaagaaaaggaaagtctgatggagtgatggtgatggaa 24395590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 246
Target Start/End: Complemental strand, 34425845 - 34425609
Alignment:
Q  14 taataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatggaacgcatggta 113  Q
    ||||||||||||||||||||||| || | | |||||||||||||||||| | ||       | ||| || |||||||| |||| |||||||||  |||||    
T  34425845 taataggcctaaaacaagacaacagaagggaaaaaggaaatcaaatcggggcag---aaaagaaaattctgatggagttatggcgatggaacgtgtggta 34425749  T
Q  114 tcagagagaaa------aagaaattttgtttttagtagggtagtacttagtagtattaccggcctat--attattttttaggcccataccttggtgaggc 205  Q
    ||| |||||||       || ||||||||||||||| ||||||||||||||| || ||| || ||||  ||| ||||| |  | ||||||||||  || |    
T  34425748 tcaaagagaaagaggatgaggaattttgtttttagtggggtagtacttagtaatactactgggctataaattttttttgaaactcataccttgggaagac 34425649  T
Q  206 ccagttccattgaactccttgcagaccccaaggtccggcct 246  Q
    ||||||| ||||| ||| ||||| | |||||||| ||||||    
T  34425648 ccagttcaattgagctctttgcaca-cccaaggttcggcct 34425609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 14318542 - 14318595
Alignment:
Q  14 taataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaag 67  Q
    ||||||||||||||||| || ||  | |||||||||||||||||||||||||||    
T  14318542 taataggcctaaaacaaaactacaaaagaggaaaaggaaatcaaatcggagaag 14318595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 34307416 - 34307484
Alignment:
Q  180 tttttaggcccataccttggtgaggcccagttccattgaactccttgcagaccccaaggtccggccttg 248  Q
    |||| |||||||||||| |  |||| || |||||||||| || |||||  |||||||||||||||||||    
T  34307416 ttttgaggcccatacctcgaggaggtccggttccattgagcttcttgcgcaccccaaggtccggccttg 34307484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 39134872 - 39135125
Alignment:
Q  1 ggacccaattctataataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgat 100  Q
    |||||||||||||  |||||| |||||||||||||| || ||||||||| |||||||||||| ||||       ||||| || |||||||||||||||||    
T  39134872 ggacccaattcta--ataggcttaaaacaagacaacagaagaggaaaagaaaatcaaatcggggaagaagaaaaggaaaatctgatggagtgatggtgat 39134969  T
Q  101 ggaacgcatggtatcagagagaa-----aaagaaat---tttgtttttagtagggtagtacttagtagtattaccggcctata---ttattttttaggcc 189  Q
    |||||||||||||||||||||||     || |||||   ||| |||||| | |||||||||||||||||| ||| || |||||   || ||||| |||||    
T  39134970 ggaacgcatggtatcagagagaaagaataaggaaatttgtttttttttactggggtagtacttagtagtactactgggctataattttgtttttgaggcc 39135069  T
Q  190 cataccttggtgaggcccagttccattgaactccttgcagaccccaaggtccggcc 245  Q
    |||||||||| |||||||||||||||||| ||| ||||| |||||||||| |||||    
T  39135070 cataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggcc 39135125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 25 - 129
Target Start/End: Original strand, 10926115 - 10926219
Alignment:
Q  25 aaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatggaacgcatggtatcagagagaaa 124  Q
    |||||||||||| || |||||||||||||||||||||||||||       |||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  10926115 aaacaagacaacagaagaggaaaaggaaatcaaatcggagaagaagaaaaggaaagtctgatggagtgatggtgatggaacgcatggtaccagagagaaa 10926214  T
Q  125 aagaa 129  Q
     ||||    
T  10926215 gagaa 10926219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 26803902 - 26803758
Alignment:
Q  14 taataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatggaacgcatggta 113  Q
    ||||||| ||||||||||||||| || |||||||| |||||||||||||  |||       | |||||| |||||||||||||||||||||| |  ||||    
T  26803902 taataggactaaaacaagacaacagaagaggaaaaagaaatcaaatcgggaaagaagaaaagaaaagtctgatggagtgatggtgatggaacacgcggta 26803803  T
Q  114 tcagagagaaaaagaa-attttgtttttagtagggtagtacttag 157  Q
    | ||||||||| |||| | |   |||||||| |||||||||||||    
T  26803802 ttagagagaaagagaataatgattttttagtggggtagtacttag 26803758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 50146154 - 50146068
Alignment:
Q  133 ttgtttttagtagggtagtacttagtagtattaccggcctat-attattttttaggcccataccttggtgaggcccagttccattga 218  Q
    ||||| ||||| ||||||||||||||||||  || || |||| ||| ||||||||||  ||||||| ||||||||||  ||||||||    
T  50146154 ttgttattagtggggtagtacttagtagtaccactgggctataatttttttttaggctgataccttagtgaggcccaactccattga 50146068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 14 - 243
Target Start/End: Original strand, 34048868 - 34049103
Alignment:
Q  14 taataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatggaacgcatggta 113  Q
    |||||||||||  |||||||||| || |||||||||||||||||||||| ||||       ||||||||||||||||||||||||||||||||| |||||    
T  34048868 taataggcctagcacaagacaacagaagaggaaaaggaaatcaaatcggggaagaagaaaaggaaagtccgatggagtgatggtgatggaacgcgtggta 34048967  T
Q  114 tcagagagaa-------aaagaaattttgtttttagtagggtagtacttagtagtattaccggcctatattattttttaggcccataccttggtgaggcc 206  Q
    || |||||||       || ||| |||||||||||||||||||||||||||||||  ||| || ||||| | ||||||| || |||||| | | ||| |     
T  34048968 tcggagagaaagagaataatgaatttttgtttttagtagggtagtacttagtagttctactgggctataat-ttttttaagctcataccatagggagaca 34049066  T
Q  207 cagttccattgaactccttgcagaccccaaggtccgg 243  Q
    ||||| |||| |  |||||||| ||||||||||||||    
T  34049067 cagtttcattaagttccttgcacaccccaaggtccgg 34049103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 15167563 - 15167686
Alignment:
Q  1 ggacccaattctataataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgat 100  Q
    |||||||||||||  ||||||||||||||||||||| || |||||||||||||||||||||||||||       |||||||| ||| |||||||||||||    
T  15167563 ggacccaattcta--ataggcctaaaacaagacaacagaagaggaaaaggaaatcaaatcggagaagaagaaaaggaaagtctgatagagtgatggtgat 15167660  T
Q  101 ggaacgcatggtatcagagagaaaaa 126  Q
    ||||||| ||||||||||||||||||    
T  15167661 ggaacgcgtggtatcagagagaaaaa 15167686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 15078713 - 15078548
Alignment:
Q  1 ggacccaattctataataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgat 100  Q
    |||||||||||||  | ||||||||||||||||||| || |||||||||||||||||||||||||||        ||||||| ||| |||||||||||||    
T  15078713 ggacccaattcta--acaggcctaaaacaagacaacagaagaggaaaaggaaatcaaatcggagaagaagaaaatgaaagtctgatagagtgatggtgat 15078616  T
Q  101 ggaacgcatggtatcagagagaaa------aagaaattttgtttttagtagggtagtacttagtagta 162  Q
    ||||||| ||||||||||||||||      ||| |||||| | |||||| ||||||||||||||||||    
T  15078615 ggaacgcgtggtatcagagagaaaaataataaggaattttttatttagtggggtagtacttagtagta 15078548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 8646141 - 8646001
Alignment:
Q  15 aataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatggaacgcatggtat 114  Q
    ||||||||||||||||||||||  | |||||||||||||||||||| | ||||        ||||||  ||||||||||| |||||| ||||| ||||||    
T  8646141 aataggcctaaaacaagacaacataagaggaaaaggaaatcaaatcagggaagaagaaaatgaaagtatgatggagtgatagtgatgaaacgcgtggtat 8646042  T
Q  115 cagagagaaa-aagaaattttgtttttagtagggtagtact 154  Q
    |||||||||| || | | ||| |||||||| ||||||||||    
T  8646041 cagagagaaagaaaataatttttttttagtggggtagtact 8646001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 38009297 - 38009384
Alignment:
Q  14 taataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatg 101  Q
    ||||||||||||||||||||||| || |||||||||||||| |||||||| |||       |||||||  ||||||||||||||||||    
T  38009297 taataggcctaaaacaagacaacagaagaggaaaaggaaattaaatcggacaagaagaaaaggaaagtatgatggagtgatggtgatg 38009384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 7944763 - 7944826
Alignment:
Q  179 ttttttaggcccataccttggtgaggcccagttccattgaactccttgcagaccccaaggtccg 242  Q
    ||||||||||||||||||||| || |||||||||||||||||   ||||| |||||||||||||    
T  7944763 ttttttaggcccataccttggggaagcccagttccattgaacggtttgcacaccccaaggtccg 7944826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 245
Target Start/End: Original strand, 25562010 - 25562076
Alignment:
Q  179 ttttttaggcccataccttggtgaggcccagttccattgaactccttgcagaccccaaggtccggcc 245  Q
    |||||||||||||||| |||| ||||||   ||||||||| ||||||||| ||||||||||||||||    
T  25562010 ttttttaggcccatactttggggaggcctgattccattgagctccttgcacaccccaaggtccggcc 25562076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 41677334 - 41677387
Alignment:
Q  14 taataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaag 67  Q
    |||||||||||||||||||||||  | |||||||||||||||||||||| ||||    
T  41677334 taataggcctaaaacaagacaacataagaggaaaaggaaatcaaatcggggaag 41677387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 5973367 - 5973429
Alignment:
Q  188 cccataccttggtgaggcccagttccattgaactccttgcagaccccaaggtccggccttgct 250  Q
    |||||||||||| ||||||||| |||||||| |   ||||||||||||||||| |||| ||||    
T  5973367 cccataccttggggaggcccagctccattgagcggtttgcagaccccaaggtctggccctgct 5973429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 245
Target Start/End: Original strand, 38009479 - 38009545
Alignment:
Q  179 ttttttaggcccataccttggtgaggcccagttccattgaactccttgcagaccccaaggtccggcc 245  Q
    |||||||||  |||||||||| ||||| ||| |||||||| ||| || || ||||||||||||||||    
T  38009479 ttttttaggttcataccttggggaggctcagctccattgagctctttacacaccccaaggtccggcc 38009545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 25561656 - 25561706
Alignment:
Q  1 ggacccaattctataataggcctaaaacaagacaactgacgaggaaaaggaaa 53  Q
    |||||||||||||  ||||||||||||||||||||| ||  ||||||||||||    
T  25561656 ggacccaattcta--ataggcctaaaacaagacaacagaataggaaaaggaaa 25561706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 8645961 - 8645917
Alignment:
Q  201 gaggcccagttccattgaactccttgcagaccccaaggtccggcc 245  Q
    ||||| |||||||||||| ||||||||| ||| ||||||||||||    
T  8645961 gaggctcagttccattgagctccttgcacaccacaaggtccggcc 8645917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1320 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 1309 - 1144
Alignment:
Q  1 ggacccaattctataataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgat 100  Q
    |||||||||||||  | ||||||||||||||||||| || |||||||||||||||||||||||||||        ||||||| ||| |||||||||||||    
T  1309 ggacccaattcta--acaggcctaaaacaagacaacagaagaggaaaaggaaatcaaatcggagaagaagaaaatgaaagtctgatagagtgatggtgat 1212  T
Q  101 ggaacgcatggtatcagagagaaa------aagaaattttgtttttagtagggtagtacttagtagta 162  Q
    ||||||| ||||||||||||||||      ||| |||||| | |||||| ||||||||||||||||||    
T  1211 ggaacgcgtggtatcagagagaaaaataataaggaattttttatttagtggggtagtacttagtagta 1144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 15735053 - 15734807
Alignment:
Q  2 gacccaattctataataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatg 101  Q
    ||||||||||||  | ||||||||||||||  ||| || |||||||||||||||||||||||||||        ||| |||| ||| |||||| ||||||    
T  15735053 gacccaattcta--acaggcctaaaacaagtgaacagaagaggaaaaggaaatcaaatcggagaagaagaaaacgaatgtccaatgaagtgatagtgatg 15734956  T
Q  102 gaacgcatggtatcagagagaaaaag-------aaattttgtttttagtagggtagtacttagtagtattaccggcctata---ttattttttaggccca 191  Q
    |||||| |||||||| ||||||||||       ||| |||||||||||| |||||||||||||||||| |||  |  ||||   || ||||| |||||||    
T  15734955 gaacgcgtggtatcaaagagaaaaagaataaaaaaaatttgtttttagtggggtagtacttagtagtactacttggttataattttttttttgaggccca 15734856  T
Q  192 taccttggtgaggcccagttccattgaactccttgcagaccccaaggtc 240  Q
    |||||||| |||| || |||||||| | ||||||||| | |||||||||    
T  15734855 taccttggggaggtccggttccattcagctccttgcacatcccaaggtc 15734807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 2 - 157
Target Start/End: Original strand, 37746871 - 37747028
Alignment:
Q  2 gacccaattctataataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatg 101  Q
    ||||||||||||  ||||||||||||||||||||| || |||||||| ||||||||||||| ||||       |||||||||||||||||||||||||||    
T  37746871 gacccaattcta--ataggcctaaaacaagacaacagaagaggaaaaagaaatcaaatcgg-gaagaagaaaaggaaagtccgatggagtgatggtgatg 37746967  T
Q  102 gaacgcatggtatcagagagaaa------aagaaattttgtttttagtagggtagtacttag 157  Q
    | | || ||||||||||||||||      |||||| |||||||||||| |||||||||||||    
T  37746968 gtatgcgtggtatcagagagaaagataataagaaa-tttgtttttagtggggtagtacttag 37747028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 14 - 129
Target Start/End: Complemental strand, 52468233 - 52468118
Alignment:
Q  14 taataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatggaacgcatggta 113  Q
    |||||||||||||||||||||||  | |||||||||||||| ||||||| ||||       |||||||| |||||||||||||||||||||||| |||||    
T  52468233 taataggcctaaaacaagacaacataagaggaaaaggaaatgaaatcggggaagaaaaaaaggaaagtctgatggagtgatggtgatggaacgcgtggta 52468134  T
Q  114 tcagagagaaaaagaa 129  Q
    ||||||||||| ||||    
T  52468133 tcagagagaaagagaa 52468118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 242
Target Start/End: Complemental strand, 27111970 - 27111747
Alignment:
Q  22 ctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatggaacgcatggtatcagagag 121  Q
    ||||||||||| |||  | |||||||||||||||||||| ||||||       |||||||| || ||||||||||||| |||| || ||||||||||||     
T  27111970 ctaaaacaagaaaacaaaagaggaaaaggaaatcaaatcagagaagaagaaaaggaaagtctgacggagtgatggtgaaggaaagcgtggtatcagagat 27111871  T
Q  122 aaaaagaa--attttgtttttagtagggtagtacttagtagtattaccggcctat-attattttttaggcccataccttggtgaggcccagttccattga 218  Q
    ||| ||||  |   | |||||| | |||||||||||||||||| ||| || |||| | | |||||||| ||||| |||||| ||||||| ||| ||||||    
T  27111870 aaagagaataaggatttttttaatggggtagtacttagtagtactactgggctataacttttttttagacccatgccttggggaggcccggttgcattga 27111771  T
Q  219 actccttgcagaccccaaggtccg 242  Q
     ||||||||| ||| |||||||||    
T  27111770 gctccttgcacacctcaaggtccg 27111747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 129
Target Start/End: Original strand, 36118607 - 36118732
Alignment:
Q  2 gacccaattctataataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatg 101  Q
    ||||||||||||  |||||||||||| |||||||  || |||||||||||||||||||||| ||||       ||||||||||||||||||||||| |||    
T  36118607 gacccaattcta--ataggcctaaaagaagacaatagaagaggaaaaggaaatcaaatcggggaagaagaaaaggaaagtccgatggagtgatggtaatg 36118704  T
Q  102 gaacgcatggtatcagagagaaaaagaa 129  Q
    ||| || |||||||||||||||| ||||    
T  36118705 gaaagcgtggtatcagagagaaagagaa 36118732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 2 - 162
Target Start/End: Complemental strand, 40217187 - 40217020
Alignment:
Q  2 gacccaattctataataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatg 101  Q
    ||||||||||||  |||||||||||||||||||||  | |||||||| ||||||||||||| ||||       |||||||| ||||||||||||||||||    
T  40217187 gacccaattcta--ataggcctaaaacaagacaacaaaagaggaaaaagaaatcaaatcggggaagaagaaaaggaaagtctgatggagtgatggtgatg 40217090  T
Q  102 gaacgca--tggtatcagagagaaa------aagaaa-ttttgtttttagtagggtagtacttagtagta 162  Q
    |||| ||  || ||| |||||||||      |||||| ||||||||||||| |||||||| |||||||||    
T  40217089 gaacacatgtgatattagagagaaagagaataagaaatttttgtttttagtggggtagtatttagtagta 40217020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 78 - 250
Target Start/End: Original strand, 4168097 - 4168268
Alignment:
Q  78 aagtccgatggagtgatggtgatggaacgcatggtatcagagagaaaaagaaattttgtttttagtagggtagtacttagtagtattaccggcctata-- 175  Q
    ||||| |||||||||||||||||||||||| ||  |    |||||| | | | |||| |||||| | |||||||||||||||||| | | ||  ||||      
T  4168097 aagtcagatggagtgatggtgatggaacgcgtgagaa---agagaatatggatttttttttttaatggggtagtacttagtagtactgctgggatataat 4168193  T
Q  176 ttattttttaggcccataccttggtgaggcccagttccattgaactccttgcagaccccaaggtccggccttgct 250  Q
    || ||||||||||||||||||||  ||| |||  || |||||||||||||||| |||| ||||| ||||||||||    
T  4168194 tttttttttaggcccataccttgaagagacccgatttcattgaactccttgcacaccctaaggttcggccttgct 4168268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 36363030 - 36363076
Alignment:
Q  14 taataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatc 60  Q
    ||||||| |||||||||||||||||| |||||||| |||||||||||    
T  36363030 taataggtctaaaacaagacaactgaagaggaaaatgaaatcaaatc 36363076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 2135467 - 2135578
Alignment:
Q  1 ggacccaattctataataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgat 100  Q
    |||||||||||||  ||| ||||||||||||| |||  | ||| |||| ||||||||||||| ||||       |||||||| |||||||||||| ||||    
T  2135467 ggacccaattcta--ataagcctaaaacaagataacaaaagagaaaaatgaaatcaaatcggggaagaagaaaaggaaagtctgatggagtgatgatgat 2135564  T
Q  101 ggaacgcatggtat 114  Q
     |||| ||||||||    
T  2135565 tgaacacatggtat 2135578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 39329625 - 39329679
Alignment:
Q  75 ggaaagtccgatggagtgatggtgatggaacgcatggtatcagagagaaaaagaa 129  Q
    |||||||| ||| |||||||| |||| |||||| |||||||||||||||| ||||    
T  39329625 ggaaagtctgattgagtgatgatgatagaacgcgtggtatcagagagaaagagaa 39329679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 24396810 - 24396769
Alignment:
Q  88 gagtgatggtgatggaacgcatggtatcagagagaaaaagaa 129  Q
    |||||||||||||||||||| | |||||||||||||| ||||    
T  24396810 gagtgatggtgatggaacgcttagtatcagagagaaagagaa 24396769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 50677231 - 50677288
Alignment:
Q  76 gaaagtccgatggagtgatggtgatggaacgc----atggtatcagagagaaaaagaa 129  Q
    ||||| ||||||||||||||||||||||| ||    ||||||||||||||||| ||||    
T  50677231 gaaagaccgatggagtgatggtgatggaatgcgtggatggtatcagagagaaagagaa 50677288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 238
Target Start/End: Complemental strand, 26279485 - 26279254
Alignment:
Q  14 taataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatggaacgcatggta 113  Q
    ||||||||||||||||||||||  || |||||||| ||||||||||||| || |       |||||||  | |||||||||||||||||||||  |||||    
T  26279485 taataggcctaaaacaagacaatagaagaggaaaatgaaatcaaatcggggatgaagaaaaggaaagtttgttggagtgatggtgatggaacgtgtggta 26279386  T
Q  114 tcagagagaaa------aagaaattttgtttttagtagggtagtacttagtagtattaccggcctat-attattttttaggcccataccttggtgaggcc 206  Q
    |||||||||||      ||| |||||||| |||||| | |||||| ||||||||| ||| |  |||| ||| |||||||| | |||||| ||| ||||||    
T  26279385 tcagagagaaagagaataaggaattttgtgtttagtggagtagtatttagtagtactactgagctataatttttttttagactcataccctggggaggcc 26279286  T
Q  207 cagttccattgaactccttgcagaccccaagg 238  Q
    ||| |||| ||| ||||||||| |||| ||||    
T  26279285 cagctccagtgagctccttgcacaccctaagg 26279254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 42453357 - 42453257
Alignment:
Q  14 taataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatggaacgcatggta 113  Q
    ||||||||||||||||||||||| || || ||||||||||||||||||| ||||       |||||||| ||| |||||||||||||||||||| |||||    
T  42453357 taataggcctaaaacaagacaacagaagaagaaaaggaaatcaaatcggggaagaagaaaaggaaagtctgatagagtgatggtgatggaacgcgtggta 42453258  T
Q  114 t 114  Q
    |    
T  42453257 t 42453257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 52374603 - 52374500
Alignment:
Q  14 taataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatggaacgcatggta 113  Q
    ||||||||||||||||||||||| ||      |||||||||||||| || ||||       |||||||| |||  ||||||||||||||||||| |||||    
T  52374603 taataggcctaaaacaagacaacaga------aaaggaaatcaaattggggaagaagaaaaggaaagtctgataaagtgatggtgatggaacgcgtggta 52374510  T
Q  114 tcagagagaa 123  Q
    ||||| ||||    
T  52374509 tcagaaagaa 52374500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 244
Target Start/End: Original strand, 23641460 - 23641525
Alignment:
Q  179 ttttttaggcccataccttggtgaggcccagttccattgaactccttgcagaccccaaggtccggc 244  Q
    ||||| ||||||||||||||| ||||||| |||||||||| |   ||||| ||||||| |||||||    
T  23641460 tttttgaggcccataccttggggaggcccggttccattgagcggtttgcacaccccaaagtccggc 23641525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 28689521 - 28689574
Alignment:
Q  14 taataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaag 67  Q
    |||||||| |||||||||||||| || ||||| || ||||||||||||| ||||    
T  28689521 taataggcttaaaacaagacaacagaagaggagaaagaaatcaaatcggggaag 28689574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 22 - 242
Target Start/End: Original strand, 2477752 - 2477976
Alignment:
Q  22 ctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatggaacgcatggtatcagagag 121  Q
    ||||||||||| |||  | |||||||||||||||||||| ||||||       |||||||| || ||||||||||||| |||| || ||||||||||||     
T  2477752 ctaaaacaagaaaacaaaagaggaaaaggaaatcaaatcagagaagaagaaaaggaaagtctgacggagtgatggtgaaggaaagcgtggtatcagagat 2477851  T
Q  122 aaaaagaa-----attttgtttttagtagggtagtacttagtagtattaccggcctat-attattttttaggcccataccttggtgaggcccagttccat 215  Q
    ||| ||||     |||||  ||||| | |||||||||||||||||| ||| || |||| | | |||||||| ||||| |||||| ||||||| ||| |||    
T  2477852 aaagagaataaggatttt--ttttaatggggtagtacttagtagtactactgggctataacttttttttagacccatgccttggggaggcccggttgcat 2477949  T
Q  216 tgaactccttgcagaccccaaggtccg 242  Q
    ||| ||||||||| ||| |||||||||    
T  2477950 tgagctccttgcacacctcaaggtccg 2477976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 129
Target Start/End: Complemental strand, 20611745 - 20611620
Alignment:
Q  2 gacccaattctataataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatg 101  Q
    ||||||||||||  |||||||||||||||||||||  | |||||||| ||||||||||||| ||||       |||||||| |||||||  |||||||||    
T  20611745 gacccaattcta--ataggcctaaaacaagacaacaaaagaggaaaaagaaatcaaatcggggaagaagaaaaggaaagtctgatggagcaatggtgatg 20611648  T
Q  102 gaacgcatggtatcagagagaaaaagaa 129  Q
    |||||| || ||||| ||||||| ||||    
T  20611647 gaacgcttgatatcatagagaaagagaa 20611620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 20611582 - 20611510
Alignment:
Q  171 ctatattatttttt-aggcccataccttggtgaggcccagttccattgaactccttgcagaccccaaggtccg 242  Q
    ||||||| |||||| || |||||||||| | ||||||||| |||||||| ||| ||||| |||||||||||||    
T  20611582 ctatattttttttttagacccataccttagggaggcccagctccattgagctctttgcacaccccaaggtccg 20611510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 4036896 - 4036783
Alignment:
Q  139 ttagtagggtagtacttagtagtattaccggcctatattatttttt-aggcccataccttggtgaggcccagttccattgaactccttgcagaccccaag 237  Q
    ||||| || ||||||||||||||| ||| || ||||| | |||||| |||| ||||| |||| ||||||||  |||||||| |   ||||| ||||||||    
T  4036896 ttagtgggatagtacttagtagtactactgggctataattttttttgaggctcatacattggggaggcccaactccattgagcgttttgcacaccccaag 4036797  T
Q  238 gtccggccttgctc 251  Q
    ||||| || |||||    
T  4036796 gtccgaccctgctc 4036783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 136 - 244
Target Start/End: Complemental strand, 38907 - 38798
Alignment:
Q  136 tttttagtagggtagtacttagtagtattaccggcctatattatttttt-aggcccataccttggtgaggcccagttccattgaactccttgcagacccc 234  Q
    ||||||||||||||  ||||||||||| ||| || ||||| | |||||| |||||||||||||||  || |||||||||||||||||||||||| |||||    
T  38907 tttttagtagggtaacacttagtagtactactggactataattttttttgaggcccataccttgggaagacccagttccattgaactccttgcacacccc 38808  T
Q  235 aaggtccggc 244  Q
    || |||||||    
T  38807 aaagtccggc 38798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 231020 - 231167
Alignment:
Q  14 taataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatggaacgcatggta 113  Q
    ||||||||||||||||| | |||  | ||||||| |||||||||||| | ||||       |||||||| |||||||||||| ||||||||| |||||||    
T  231020 taataggcctaaaacaatataacaaaagaggaaagggaaatcaaatcagggaagaagaaaaggaaagtctgatggagtgatgttgatggaacacatggta 231119  T
Q  114 tcagagagaaaaagaa-att-ttgtttttagtagggtagtacttagta 159  Q
    ||||||||||| |||| ||| || |||||| | |||||||||||||||    
T  231120 tcagagagaaagagaatattattttttttaatggggtagtacttagta 231167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 246
Target Start/End: Original strand, 232544 - 232611
Alignment:
Q  179 ttttttaggcccataccttggtgaggcccagttccattgaactccttgcagaccccaaggtccggcct 246  Q
    |||||||| | |||||||| | ||||||| |||||||||||||||||||| |  ||| ||||||||||    
T  232544 ttttttagactcataccttagggaggcccggttccattgaactccttgcacatgccagggtccggcct 232611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 173671 - 173771
Alignment:
Q  14 taataggcctaaaacaagacaactgacgaggaaaaggaaatcaaatcggagaagnnnnnnnggaaagtccgatggagtgatggtgatggaacgcatggta 113  Q
    ||||||||||||||| ||||||| || |||||||||||||||||||| | ||||       |||||||| |||||| ||||||||||| | ||| |||||    
T  173671 taataggcctaaaactagacaacagaagaggaaaaggaaatcaaatcagggaagaagaaaaggaaagtctgatggaatgatggtgatgaagcgcgtggta 173770  T
Q  114 t 114  Q
    |    
T  173771 t 173771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1590 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1590
Description:

Target: scaffold1590; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 248
Target Start/End: Original strand, 432 - 501
Alignment:
Q  179 ttttttaggcccataccttggtgaggcccagttccattgaactccttgcagacccc-aaggtccggccttg 248  Q
    ||||| ||| |||||||||||  ||||| ||||| ||||||||||||||| ||||| ||||||||||||||    
T  432 tttttgaggtccataccttggcaaggcc-agttctattgaactccttgcacaccccaaaggtccggccttg 501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University