View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14408_low_9 (Length: 273)
Name: NF14408_low_9
Description: NF14408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14408_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 13 - 257
Target Start/End: Complemental strand, 24615850 - 24615606
Alignment:
| Q |
13 |
agagatgatagtgaggattttgttgaacaaagtgattttgaactggtggattttatgttggattcaaaatatgtgatagataaatttcacagccaaagag |
112 |
Q |
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| T |
24615850 |
agagatgatagtgaggattttgttgaacaaagtgattttgaactggtggattttatgttggattcaaaatatgtgatagataaatttcacagccaaagag |
24615751 |
T |
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| Q |
113 |
aggatatcattatttctattcacaacttattataactatatataaaaatagttcgactttattctactcttctggtgaatggttatgcagcatgtggtag |
212 |
Q |
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| T |
24615750 |
aggatatcattatttctattcacaacttattataactatatataaaaatagttcgactttattctactcttctggtgaatggttatgcagcatgtggtag |
24615651 |
T |
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| Q |
213 |
tcactggccttataagtgccaactctatatttcagggttagaagg |
257 |
Q |
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| T |
24615650 |
tcactggccttataagtgccaactctatatttcagggttagaagg |
24615606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 24114954 - 24115032
Alignment:
| Q |
42 |
aagtgattttgaactggtggattttatgttggattcaaaatatgtgatagataaatttcacagccaaagagaggatatc |
120 |
Q |
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| T |
24114954 |
aagtgattttaagctggtcgatttttagttggattcaaaatatgtggtagataaatttctcagtcaaaaggaggatatc |
24115032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 24115638 - 24115686
Alignment:
| Q |
209 |
gtagtcactggccttataagtgccaactctatatttcagggttagaagg |
257 |
Q |
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| T |
24115638 |
gtagtcacagaccttataagtactaactctatatttcagggttagaagg |
24115686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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