View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14409_high_1 (Length: 619)
Name: NF14409_high_1
Description: NF14409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14409_high_1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 167 - 619
Target Start/End: Original strand, 25378559 - 25379011
Alignment:
| Q |
167 |
aaatgatagattcatcattttagaatcaccagcagcagcactaataaaactgagcagaagaaaccaactccaacaaatccatctctctcttcccctctga |
266 |
Q |
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| T |
25378559 |
aaatgatagattcatcattttagaatcaccagcagcagcactaataaaactgagcagaagaaaccaactccaacaaatccatctctctcttcccctctga |
25378658 |
T |
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| Q |
267 |
aaaattcatattcccaagatacaactccacgttgttctgattctgaagtccattcagcattggaggaaggtagtggtcagaattaaggtaattcatcata |
366 |
Q |
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| T |
25378659 |
aaaattcatattcccaagatgcaactccacgttgttctgattctgaattccattcagcattggaggaaggtagtggtcagaattaaggtaattcatcata |
25378758 |
T |
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| Q |
367 |
ggtgtcgaagaagtactcaagtacatgttgttttgtgaatttggcttagggtaattggaaggattggaatgaacaaatccacaatcagtaacatcaggga |
466 |
Q |
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| T |
25378759 |
ggtgtggaagaagtactcaagtacatgttgttttgtgaatttggcttagggtaattggaaggattggaatgaacaaatccacaatcagtaacatcaggga |
25378858 |
T |
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| Q |
467 |
gaatctgattactgttagtttgggaagaataatccaatggataagagtttgaagagggtttcttggagtaggggttaacaggttcagcattattattcac |
566 |
Q |
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| T |
25378859 |
gaatctgattactgttagtttgggaagaataatccaatggataagagtttgaagagggtttcttggagtaggggttaacaggttcagcattattattcac |
25378958 |
T |
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| Q |
567 |
cttgaaaagttgttgcatgaagagaagttcatcatcataagattcagatataa |
619 |
Q |
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| T |
25378959 |
cttgaaaagttgctgcatgaagagaagttcatcatcataagattcagatataa |
25379011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 25378392 - 25378513
Alignment:
| Q |
1 |
aaacaaatccaaagtggaaagtacatactaaaacaaaacaaagtcaagactaaacaatccaaattaatgtcaaatgcatactaccatgctatagtggaag |
100 |
Q |
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| T |
25378392 |
aaaccaatccaaagtggaaagtacatactaaaacaaaacaaagtcaagactaaacaatccaaattaatgtcaaatgcatactaccatgctatagtggaag |
25378491 |
T |
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| Q |
101 |
catggtttatcaaacgtggaag |
122 |
Q |
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| T |
25378492 |
catggtttatcaaacgtggaag |
25378513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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