View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14409_high_12 (Length: 348)
Name: NF14409_high_12
Description: NF14409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14409_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 131 - 330
Target Start/End: Original strand, 25379139 - 25379338
Alignment:
| Q |
131 |
agcagtagtactgatgaacgctttttgagtagtcaaagttttgatatagtcttgaagaatagaagattgtggtttaccatcagtggtttgaggccttttg |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25379139 |
agcagtagtactgatgaacgctttttgagtagtcaaagttttgatatagtcttgaagaatagaagattgtggtttaccatcagtggtttgaggccttttg |
25379238 |
T |
|
| Q |
231 |
ttctttctccttgaattttgtctcctttttgttgcattccaatgattctttattgcattctcagttcttccaggaattctctttgctatctccgcccaac |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25379239 |
ttctttctccttgaattttgtctcctttttgttgcattccaatgattctttattgcattctcagttcttccaggaattctctttgctatctctgcccaac |
25379338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 25378988 - 25379115
Alignment:
| Q |
13 |
catcatcataagattcagatataagtggtgatgatgaattttcatgagataggttagaaaaaacaaaggaagattggtttgaagaagggtcctcagagat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25378988 |
catcatcataagattcagatataagtggtgatgatgaattttcatgagataggttagaaaaaacaaaggaagattggtttgaagaagggtcctcagagat |
25379087 |
T |
|
| Q |
113 |
cgctgacacggagctagtagcagtagta |
140 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
25379088 |
cgctgacacggagctagtagcagtagta |
25379115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 228 - 330
Target Start/End: Original strand, 29671189 - 29671291
Alignment:
| Q |
228 |
ttgttctttctccttgaattttgtctcctttttgttgcattccaatgattctttattgcattctcagttcttccaggaattctctttgctatctccgccc |
327 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||| |||||||||||||| ||||| ||||| ||||||||||| ||||| ||||||||||||| |||| |
|
|
| T |
29671189 |
ttgttctttcttcttgaattttgtcttctttttgtggcattccaatgattttttatggcattttcagttcttcctggaatcttctttgctatctcagccc |
29671288 |
T |
|
| Q |
328 |
aac |
330 |
Q |
| |
|
||| |
|
|
| T |
29671289 |
aac |
29671291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 258 - 328
Target Start/End: Complemental strand, 43866564 - 43866494
Alignment:
| Q |
258 |
tttgttgcattccaatgattctttattgcattctcagttcttccaggaattctctttgctatctccgccca |
328 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||| || | ||| || || ||||||||||| |
|
|
| T |
43866564 |
tttgttgcattccaatggttttttattgcattctcagttcttcctggcaatcttttcgcaatctccgccca |
43866494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University