View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14409_high_13 (Length: 336)
Name: NF14409_high_13
Description: NF14409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14409_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 321
Target Start/End: Original strand, 46639607 - 46639911
Alignment:
| Q |
16 |
ataaacttaaattaaaagtacaaaagaaacagaaaaatcaatttatagtatagaactaaaatcaaattaaatttgaaacctttcatcaaagaaataaaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46639607 |
ataaacttaaattaaaagtacaaaagaaacagaaaaatcaatttatagtatagaactaaaatcaaattaaatttgaaacctttcatcaaagaaataaaaa |
46639706 |
T |
|
| Q |
116 |
tggtaaaagacatttgaacatatgataggtagtttaatctagttgaatattcaagcaatagaattagaaattttcaatatnnnnnnnnnnnnnnnnnnnn |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
46639707 |
tggtaaaagacatttgaacatatgataggtagtttaatctagttgaatattcaagcaatataattagaaattttcaatataaaaacagaaaaagaatgca |
46639806 |
T |
|
| Q |
216 |
nnnnngtctaaccaaaatatacacattcttcattttctcaaagtataaaaatattataatcatgatcaaaagctgtatggatgtccgtttaaatgtctaa |
315 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46639807 |
aaaaagtctaaccaaaatatacacattcttca-tttctcaaagtataaaaatattataatcatgatcaaaagctgtatggatgtccgtttaaatgtctaa |
46639905 |
T |
|
| Q |
316 |
ccaaac |
321 |
Q |
| |
|
|||||| |
|
|
| T |
46639906 |
ccaaac |
46639911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University