View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14409_high_14 (Length: 301)
Name: NF14409_high_14
Description: NF14409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14409_high_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 30891198 - 30891492
Alignment:
| Q |
1 |
tagattcttttcttggattctgaaaaataatctacattgcaggcttctggtataaatggatttatattctatgctccacaaatacttgatcaagcaggag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30891198 |
tagattcttttcttggattctgaaaaataatctacattgcaggcttctggtataaatggatttatattctatgctccacaaatacttgatcaagcaggag |
30891297 |
T |
|
| Q |
101 |
ttggagcacttttgtccaatctgggcattagttcagcgtcttcttctttacttgtaaatgtcgtgacaacattctgcatgcttccttgtatagctatttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30891298 |
ttggagcacttttgtccaatctgggcattagttcagcgtcttcttctttacttgtaaatgtcgtaacaacattctgcatgcttccttgtatagctatttc |
30891397 |
T |
|
| Q |
201 |
catgaggttgatggatatatcaggaaggaggtatgtttacactgagtcatagcctgaatttccttttagtactgtacctgttcttgcaagaaaac |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30891398 |
catgaggttgatggatatatcaggaaggaggtatgtttacactgagtcatagcctgaatttccttttagtactgtacctgttcttgcaagaaaac |
30891492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 9951426 - 9951243
Alignment:
| Q |
16 |
gattctgaaaa-ataatctacattgcaggcttctggtataaatggatttatattctatgctccacaaatacttgatcaagcaggagttggagcacttttg |
114 |
Q |
| |
|
||||||||||| |||||| |||||||||||| |||| |||||||||||| ||| ||||||||| || || ||||| || |||||||| || || ||| | |
|
|
| T |
9951426 |
gattctgaaaatataatccacattgcaggctgctggcataaatggatttctatactatgctcctcagattcttgagcaggcaggagtaggggctcttcta |
9951327 |
T |
|
| Q |
115 |
tccaatctgggcattagttcagcgtcttcttctttacttgtaaatgtcgtgacaacattctgcatgcttccttgtatagctatt |
198 |
Q |
| |
|
|| ||| | ||||| |||||| ||| ||||||| ||||||||| | | ||||||||||| ||||| ||||||||||||||| |
|
|
| T |
9951326 |
tcaaatttaggcatcagttcaatatctgcttcttttcttgtaaatataattacaacattctgtatgctcccttgtatagctatt |
9951243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 200
Target Start/End: Complemental strand, 19694305 - 19694139
Alignment:
| Q |
34 |
acattgcaggcttctggtataaatggatttatattctatgctccacaaatacttgatcaagcaggagttggagcacttttgtccaatctgggcattagtt |
133 |
Q |
| |
|
|||||||||||| |||| |||||||||||| ||||||||||||| || || ||||| || |||||||| ||| | ||| | || ||| | ||||| || | |
|
|
| T |
19694305 |
acattgcaggctgctggcataaatggatttctattctatgctcctcagattcttgagcaggcaggagtaggatctcttctatcaaatttaggcatcagct |
19694206 |
T |
|
| Q |
134 |
cagcgtcttcttctttacttgtaaatgtcgtgacaacattctgcatgcttccttgtatagctatttc |
200 |
Q |
| |
|
|| ||| ||||||| ||||| ||| | | ||| ||||||| ||||||||||| ||||||||||| |
|
|
| T |
19694205 |
caatatctgcttcttttcttgttaatattattacatcattctgtatgcttccttgcatagctatttc |
19694139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University