View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14409_high_24 (Length: 236)
Name: NF14409_high_24
Description: NF14409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14409_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 9671210 - 9671277
Alignment:
| Q |
156 |
gtcaagttgtgtaatggttaaaaattcatccctcaaggtgaataaagatgaaatatgtggttcaaact |
223 |
Q |
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| T |
9671210 |
gtcaagttgtgtaatggttaaaaattcatccctcaaagtgaataaagatgaaacctgtggttcaaact |
9671277 |
T |
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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 9671055 - 9671099
Alignment:
| Q |
1 |
tcataaataagtaaaagtcttactaagaaataaacaaagcattag |
45 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9671055 |
tcataaataagttaaagtcttactaagaaataaacaaagcattag |
9671099 |
T |
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