View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14409_high_27 (Length: 214)
Name: NF14409_high_27
Description: NF14409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14409_high_27 |
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Alignment Details
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 2 - 213
Target Start/End: Complemental strand, 13933106 - 13932895
Alignment:
| Q |
2 |
atgaatggtgtgatctctgaatatcatttttctggtatgtcaatgttaaaggatttagacttgtcagacaattcactagcattgagatttaccgaaaatt |
101 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
13933106 |
atgaatggtgtgatctctgaatttcatttttctggtatgtcaatgttaaaggaattagacttgtcagacaattcactagcattgagatttactgaaaatt |
13933007 |
T |
|
| Q |
102 |
gggtccctccttttcaactgtacggcataggattgagatcatgcgaacttggtcttacatttcctaaatggattcaaacacaaaaacatttgcagtatct |
201 |
Q |
| |
|
||||||| |||||||||||| || | ||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||| | ||| | |||| |
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| T |
13933006 |
gggtcccaccttttcaactgaacagtataggattgagatcaagcaaacttggtcttacatttcctaaatggattcagacacaaaagtacctgctggatct |
13932907 |
T |
|
| Q |
202 |
tgatatttcgaa |
213 |
Q |
| |
|
|||||||||||| |
|
|
| T |
13932906 |
tgatatttcgaa |
13932895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 7 - 213
Target Start/End: Complemental strand, 14026034 - 14025828
Alignment:
| Q |
7 |
tggtgtgatctctgaatatcatttttctggtatgtcaatgttaaaggatttagacttgtcagacaattcactagcattgagatttaccgaaaattgggtc |
106 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| |||||| |||||||||||| |
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|
| T |
14026034 |
tggtgtgatctcagaatttcatttttctggtatgtcaatgttaaaggaattagacttgtctgacaattcacttgcattgacatttactgaaaattgggtc |
14025935 |
T |
|
| Q |
107 |
cctccttttcaactgtacggcataggattgagatcatgcgaacttggtcttacatttcctaaatggattcaaacacaaaaacatttgcagtatcttgata |
206 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| | ||||| ||||||||| |
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|
| T |
14025934 |
ccaccttttcaactgtacaatataggattgagatcatgcaaacttggtcttacatttcctaaatggattcagacacaaaagtacctgcaggatcttgata |
14025835 |
T |
|
| Q |
207 |
tttcgaa |
213 |
Q |
| |
|
||||||| |
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|
| T |
14025834 |
tttcgaa |
14025828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 5 - 214
Target Start/End: Complemental strand, 14015907 - 14015698
Alignment:
| Q |
5 |
aatggtgtgatctctgaatatcatttttctggtatgtcaatgttaaaggatttagacttgtcagacaattcactagcattgagatttaccgaaaattggg |
104 |
Q |
| |
|
||||||||||| || || | |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||| |
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|
| T |
14015907 |
aatggtgtgatttcagacttccattttgctggtatgtcaatgttaaaggaattagacttgtcagacaattcactagcattgacatttactgaaaattggg |
14015808 |
T |
|
| Q |
105 |
tccctccttttcaactgtacggcataggattgagatcatgcgaacttggtcttacatttcctaaatggattcaaacacaaaaacatttgcagtatcttga |
204 |
Q |
| |
|
|||| |||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| | || ||||||| |
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|
| T |
14015807 |
tcccaccttttcaactgcgtggtataggattgagatcatgcaaacttggtcttacatttcctaaatggattcagacacaaaaacacattcacaatcttga |
14015708 |
T |
|
| Q |
205 |
tatttcgaat |
214 |
Q |
| |
|
|||||||||| |
|
|
| T |
14015707 |
tatttcgaat |
14015698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 13874611 - 13874815
Alignment:
| Q |
6 |
atggtgtgatctctgaatatcatttttctggtatgtcaatgttaaaggatttagacttgtcagacaattcactagcattgagatttaccgaaaattgggt |
105 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||| ||||| |
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|
| T |
13874611 |
atggtgtgatctctgaattccatttttctggtatgtcaatgttaaaggaattagacttgtctgacaattcactagtattgagatttaccgaaaactgggt |
13874710 |
T |
|
| Q |
106 |
ccctccttttcaactgtacggcataggattgagatcatgcgaacttggtcttacatttcctaaatggattcaaacacaaaaacatttgcagtatcttgat |
205 |
Q |
| |
|
||| |||||||| || | ||||||||| |||| ||| ||||||||||||||||||| ||||||||||| |||||||| || || ||| || ||||| |
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|
| T |
13874711 |
cccgccttttcagttgcaaactataggattgggatcttgcaaacttggtcttacatttccaaaatggattcagacacaaaatcactttcaggatattgat |
13874810 |
T |
|
| Q |
206 |
atttc |
210 |
Q |
| |
|
||||| |
|
|
| T |
13874811 |
atttc |
13874815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 2 - 175
Target Start/End: Original strand, 13862137 - 13862310
Alignment:
| Q |
2 |
atgaatggtgtgatctctgaatatcatttttctggtatgtcaatgttaaaggatttagacttgtcagacaattcactagcattgagatttaccgaaaatt |
101 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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|
| T |
13862137 |
atgaatggtgtgatctctgaatttcatttttctggtatgtcaatgttaaaggatttagacttgtcaggcaattcactagcattgagatttaacgaaaatt |
13862236 |
T |
|
| Q |
102 |
gggtccctccttttcaactgtacggcataggattgagatcatgcgaacttggtcttacatttcctaaatggatt |
175 |
Q |
| |
|
|||| || |||||||||||| || ||||||||| |||| ||| ||| || | |||||||||||| |||||| |
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|
| T |
13862237 |
gggtgccaccttttcaactggacactataggattgggatcctgcatactcggacctacatttcctaagtggatt |
13862310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 2 - 183
Target Start/End: Complemental strand, 14111234 - 14111053
Alignment:
| Q |
2 |
atgaatggtgtgatctctgaatatcatttttctggtatgtcaatgttaaaggatttagacttgtcagacaattcactagcattgagatttaccgaaaatt |
101 |
Q |
| |
|
|||| ||| ||||| ||||||| |||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||| |||||| ||||| | |
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|
| T |
14111234 |
atgagtggagtgatatctgaatttcatttttctggtatgtcgatgttaaaggaattagacttgtctgacaattcactagcattgacatttactgaaaact |
14111135 |
T |
|
| Q |
102 |
gggtccctccttttcaactgtacggcataggattgagatcatgcgaacttggtcttacatttcctaaatggattcaaacaca |
183 |
Q |
| |
|
||||||| || |||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14111134 |
gggtcccgccatttcaacttcacattataggattgagatcatgcaaacttggtcttacatttcctaaatggattcagacaca |
14111053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 7 - 210
Target Start/End: Original strand, 13892316 - 13892519
Alignment:
| Q |
7 |
tggtgtgatctctgaatatcatttttctggtatgtcaatgttaaaggatttagacttgtcagacaattcactagcattgagatttaccgaaaattgggtc |
106 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||| |||| ||| ||||||| ||||||||||||| |||||||| || ||||||||||| |
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|
| T |
13892316 |
tggtgtgatctctgacttccatttttctggtatgtcaatgttagaggaattatccttgtcaagcaattcactagcaatgagatttccccaaaattgggtc |
13892415 |
T |
|
| Q |
107 |
cctccttttcaactgtacggcataggattgagatcatgcgaacttggtcttacatttcctaaatggattcaaacacaaaaacatttgcagtatcttgata |
206 |
Q |
| |
|
|||||||||||| || || |||||||||||||| ||| ||||||||| |||||||||||| |||||||| ||||||||||| | || ||||||||| |
|
|
| T |
13892416 |
cctccttttcaattggacactataggattgagatcctgcaaacttggtcctacatttcctaactggattcagacacaaaaacacattcaaaatcttgata |
13892515 |
T |
|
| Q |
207 |
tttc |
210 |
Q |
| |
|
|||| |
|
|
| T |
13892516 |
tttc |
13892519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 7 - 214
Target Start/End: Complemental strand, 14048083 - 14047876
Alignment:
| Q |
7 |
tggtgtgatctctgaatatcatttttctggtatgtcaatgttaaaggatttagacttgtcagacaattcactagcattgagatttaccgaaaattgggtc |
106 |
Q |
| |
|
||||||||||||||| | ||||||| ||||||||||||||||| | ||| | ||||| ||||| ||| |||||||||||||||||||||| |||||| |
|
|
| T |
14048083 |
tggtgtgatctctgacttccatttttatggtatgtcaatgttaagatacttatatttgtctgacaactcaatagcattgagatttaccgaaaactgggtc |
14047984 |
T |
|
| Q |
107 |
cctccttttcaactgtacggcataggattgagatcatgcgaacttggtcttacatttcctaaatggattcaaacacaaaaacatttgcagtatcttgata |
206 |
Q |
| |
|
|| |||||||||||| ||| |||||| || | |||||| ||||||||||||| |||||||||||||||| ||||||||| | |||| |||||||||| |
|
|
| T |
14047983 |
ccgccttttcaactgcacgatataggaatgggttcatgcaaacttggtcttacgtttcctaaatggattctgacacaaaaatacctgcattatcttgata |
14047884 |
T |
|
| Q |
207 |
tttcgaat |
214 |
Q |
| |
|
|||||||| |
|
|
| T |
14047883 |
tttcgaat |
14047876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 5 - 210
Target Start/End: Complemental strand, 14085422 - 14085217
Alignment:
| Q |
5 |
aatggtgtgatctctgaatatcatttttctggtatgtcaatgttaaaggatttagacttgtcagacaattcactagcattgagatttaccgaaaattggg |
104 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||| || |||| ||||||||||| |||||| ||||||||| || ||| ||||||| |||| |
|
|
| T |
14085422 |
aatggtgtgatctctgacttccatttttctggtatgtcaatgctagaggagttagacttgtcttacaatttactagcattaagttttgccgaaaaatggg |
14085323 |
T |
|
| Q |
105 |
tccctccttttcaactgtacggcataggattgagatcatgcgaacttggtcttacatttcctaaatggattcaaacacaaaaacatttgcagtatcttga |
204 |
Q |
| |
|
|||| |||||||||||| | ||||||||| |||| ||| |||||||| |||||||||||||||||||| ||||||||| | || | |||||||| |
|
|
| T |
14085322 |
tcccgccttttcaactgggcattataggattgggatcctgcaaacttggttcaacatttcctaaatggattcagacacaaaaatactttcgatatcttga |
14085223 |
T |
|
| Q |
205 |
tatttc |
210 |
Q |
| |
|
|||||| |
|
|
| T |
14085222 |
tatttc |
14085217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 210
Target Start/End: Original strand, 13472305 - 13472512
Alignment:
| Q |
3 |
tgaatggtgtgatctctgaatatcatttttctggtatgtcaatgttaaaggatttagacttgtcagacaattcactagcattgagatttaccgaaaattg |
102 |
Q |
| |
|
||||||| |||||||| || | ||||||||||||||||||||||||| ||||| | ||||| ||||| ||||| |||||||||||||| ||||| || |
|
|
| T |
13472305 |
tgaatggcgtgatctccgacttccatttttctggtatgtcaatgttaagatatttatatttgtctgacaactcactggcattgagatttacagaaaactg |
13472404 |
T |
|
| Q |
103 |
ggtccctccttttcaactgtacggcataggattgagatcatgcgaacttggtcttacatttcctaaatggattcaaacacaaaaacatttgcagtatctt |
202 |
Q |
| |
|
|||||| ||||| ||||||||| || | ||| |||||||| ||||||||||||||||||| ||||||||||| ||||||||| | |||| ||||| |
|
|
| T |
13472405 |
ggtcccgcctttccaactgtacactatggatttgggatcatgcaaacttggtcttacatttcccaaatggattcagacacaaaaatacctgcacaatctt |
13472504 |
T |
|
| Q |
203 |
gatatttc |
210 |
Q |
| |
|
|||||||| |
|
|
| T |
13472505 |
gatatttc |
13472512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 13929022 - 13928889
Alignment:
| Q |
77 |
ctagcattgagatttaccgaaaattgggtccctccttttcaactgtacggcataggattgagatcatgcgaacttggtcttacatttcctaaatggattc |
176 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||| || || | ||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
13929022 |
ctagcattgagatttaccgaagattgggtcccgccttttcaactggacactatggaattgagatcctgcaaacttggtcttacatttcctaaatggattc |
13928923 |
T |
|
| Q |
177 |
aaacacaaaaacatttgcagtatcttgatatttc |
210 |
Q |
| |
|
| ||||||||||| | | | ||||||||||||| |
|
|
| T |
13928922 |
agacacaaaaacacattctgaatcttgatatttc |
13928889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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