View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14409_high_6 (Length: 415)
Name: NF14409_high_6
Description: NF14409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14409_high_6 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 33904144 - 33904558
Alignment:
| Q |
1 |
attgatgaagatgaagggttgccttgggaaggtgcggttatatacaagagaaatgcttcaatcttacatttggagtattgcactactttggagagattag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33904144 |
attgatgaagatgaagggttgccttgggaaggtgcggttatatacaagagaaatgcttcaatcttacatttggagtattgcactactttggagagattag |
33904243 |
T |
|
| Q |
101 |
gcctaggaaacctttcaactgatgtttccaaaaataaggcttctgttatgggattgcgaattaccaaagcagtgaaggattttccgaatgggactccggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33904244 |
gcctaggaaacctttcaactgatgtttccaaaaataaggcttctgttatgggattgtgaattaccaaagcagtgaaggattttccgaatggggctccggt |
33904343 |
T |
|
| Q |
201 |
tcagatttctattgatgtgaccaggaagaagaagaaattgaggcttgatgggatcataaaaaccggcctcacgcttgtgtgtaataggtatttccctatc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33904344 |
tcagatttctattgatgtgaccaggaagaagaagaaattgaggcttgatgggatcataaaaaccgtcctcacgcttgtgtgtaataggtatttccctatc |
33904443 |
T |
|
| Q |
301 |
atctttagcttatgtgttgttttctttcatgattttacgcctttttacatttgtgtttgttgccatagagtaatcctacaggccccaaatgttcaaatat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
33904444 |
atctttagcttatgtgttgttttctttcatgattttacgcctttttacatttgtgtttgttgccatagattaatccttcaggccccaaatgttcaaatat |
33904543 |
T |
|
| Q |
401 |
ctatggtgaaattgc |
415 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
33904544 |
ctatggtgaaattgc |
33904558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 35955561 - 35955975
Alignment:
| Q |
1 |
attgatgaagatgaagggttgccttgggaaggtgcggttatatacaagagaaatgcttcaatcttacatttggagtattgcactactttggagagattag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35955561 |
attgatgaagatgaagggttgccttgggaaggtgctgttatatacaagagaaatgcttcaatcttacatttggagtattgcactactttggagagattag |
35955660 |
T |
|
| Q |
101 |
gcctaggaaacctttcaactgatgtttccaaaaataaggcttctgttatgggattgcgaattaccaaagcagtgaaggattttccgaatgggactccggt |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
35955661 |
gtctaggaaacctttcaactgatgtttccaaaaataaggcttctgttatgggattgcgaattaccaaagcagtgaaggattttccgaatgggactccgat |
35955760 |
T |
|
| Q |
201 |
tcagatttctattgatgtgaccaggaagaagaagaaattgaggcttgatgggatcataaaaaccggcctcacgcttgtgtgtaataggtatttccctatc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35955761 |
tcagatttctattgatgtgaccaggaagaagaagaaattgaggcttgatgggatcataaaaaccgtcctcacgcttgtgtgtaataggtatttccctatc |
35955860 |
T |
|
| Q |
301 |
atctttagcttatgtgttgttttctttcatgattttacgcctttttacatttgtgtttgttgccatagagtaatcctacaggccccaaatgttcaaatat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
35955861 |
atctttagcttatgtgttgttttctttcatgattttacgctgttttacatttgtgtttgttgccatagattaatccttcaggccccaaatgttcaaatat |
35955960 |
T |
|
| Q |
401 |
ctatggtgaaattgc |
415 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
35955961 |
ctatggtgagattgc |
35955975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University