View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14409_low_10 (Length: 378)
Name: NF14409_low_10
Description: NF14409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14409_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 337
Target Start/End: Original strand, 1866583 - 1866901
Alignment:
| Q |
19 |
aatatgtcacacaaattgttcatcaggcaaaaattgcactgcttgcttcaatttctgtataaccagtccacaaatcccttattactatcctccatcacca |
118 |
Q |
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| T |
1866583 |
aatatgtcacacaaattgttcatcaggcaaaaattgcactgcttgcttcaatttctgtataaccagtccaaaaatcccttattactatcctccatcacca |
1866682 |
T |
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| Q |
119 |
ccaccaccacaacaagatcaccacaaaatcaacaattacttcatcctcacgctttctcttcttgcttttgcnnnnnnncttgtttgtattcgtgcaattt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1866683 |
ccaccaccacaacaagatcaccacaaaatcaacaattacttcatcctcacgctttctcttcttgcttttgctttttttcttgtttgtattcgtgcaattt |
1866782 |
T |
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| Q |
219 |
acatcagtttcaggtcaagaagaagaagaagcagcttacgggcacaaccatcatcaacaactcaacaaaatgataggaattttgatgatgaagaacaaca |
318 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1866783 |
acgtcagtttcaggtcaagaagaagaagaagcagcttacgggcacaaccatcatcaacaactcaacaaaatgataggaattttgatgatgaagaacaaca |
1866882 |
T |
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| Q |
319 |
gcatcaacatggatctgtg |
337 |
Q |
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||||||||||||||||||| |
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| T |
1866883 |
gcatcaacatggatctgtg |
1866901 |
T |
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