View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14409_low_11 (Length: 372)

Name: NF14409_low_11
Description: NF14409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14409_low_11
NF14409_low_11
[»] chr2 (30 HSPs)
chr2 (164-343)||(42057034-42057209)
chr2 (164-218)||(9191988-9192042)
chr2 (164-211)||(41014472-41014519)
chr2 (164-218)||(15265766-15265820)
chr2 (164-218)||(41633373-41633427)
chr2 (169-218)||(13450352-13450401)
chr2 (165-218)||(44019864-44019917)
chr2 (172-218)||(8875285-8875331)
chr2 (172-213)||(13594086-13594127)
chr2 (168-205)||(21839803-21839840)
chr2 (169-218)||(21885154-21885203)
chr2 (164-209)||(27359860-27359905)
chr2 (165-218)||(34753399-34753452)
chr2 (177-220)||(14371597-14371640)
chr2 (169-212)||(17373853-17373896)
chr2 (174-209)||(20579287-20579322)
chr2 (164-211)||(34063422-34063469)
chr2 (164-214)||(42060229-42060279)
chr2 (167-212)||(9169947-9169992)
chr2 (164-217)||(22277727-22277780)
chr2 (169-218)||(24004405-24004454)
chr2 (169-214)||(33134359-33134404)
chr2 (164-209)||(45407197-45407242)
chr2 (172-220)||(14706464-14706512)
chr2 (168-200)||(24004934-24004966)
chr2 (164-204)||(25915055-25915095)
chr2 (164-220)||(29462882-29462938)
chr2 (167-211)||(35916904-35916948)
chr2 (168-200)||(36817354-36817386)
chr2 (164-220)||(38147818-38147874)
[»] chr3 (41 HSPs)
chr3 (164-343)||(3895096-3895273)
chr3 (165-218)||(265159-265212)
chr3 (164-218)||(7639654-7639708)
chr3 (168-218)||(42896632-42896682)
chr3 (164-218)||(49758237-49758291)
chr3 (164-214)||(50099206-50099256)
chr3 (168-213)||(13043141-13043186)
chr3 (168-213)||(13051218-13051263)
chr3 (164-212)||(17438582-17438630)
chr3 (164-203)||(18461142-18461181)
chr3 (164-211)||(22177561-22177608)
chr3 (164-218)||(26130972-26131027)
chr3 (168-214)||(19245528-19245574)
chr3 (164-218)||(22102612-22102666)
chr3 (164-217)||(5811942-5811995)
chr3 (167-212)||(54768140-54768185)
chr3 (165-213)||(285666-285714)
chr3 (164-204)||(41817387-41817427)
chr3 (165-204)||(5492835-5492874)
chr3 (164-203)||(9350321-9350360)
chr3 (164-211)||(9862262-9862309)
chr3 (164-203)||(19225119-19225158)
chr3 (167-218)||(27947952-27948003)
chr3 (164-218)||(5907140-5907194)
chr3 (164-210)||(21790321-21790367)
chr3 (168-218)||(22152459-22152509)
chr3 (164-218)||(22258430-22258484)
chr3 (172-214)||(25478954-25478996)
chr3 (168-214)||(35379563-35379609)
chr3 (167-216)||(10438466-10438515)
chr3 (167-212)||(18388610-18388655)
chr3 (169-214)||(21091804-21091849)
chr3 (165-218)||(25842533-25842586)
chr3 (164-201)||(46931749-46931786)
chr3 (167-211)||(796651-796695)
chr3 (164-220)||(4615357-4615412)
chr3 (165-205)||(12141379-12141419)
chr3 (164-204)||(18540391-18540431)
chr3 (169-213)||(21495759-21495803)
chr3 (165-205)||(39903759-39903799)
chr3 (164-204)||(45879993-45880033)
[»] chr5 (30 HSPs)
chr5 (165-218)||(936320-936373)
chr5 (170-220)||(35272229-35272279)
chr5 (169-214)||(16313452-16313497)
chr5 (168-220)||(42506447-42506499)
chr5 (168-218)||(9524091-9524141)
chr5 (164-218)||(14000663-14000717)
chr5 (164-220)||(28766484-28766540)
chr5 (164-212)||(39956005-39956053)
chr5 (164-218)||(19929638-19929692)
chr5 (164-218)||(23270848-23270902)
chr5 (164-218)||(24836945-24836999)
chr5 (172-218)||(28867406-28867452)
chr5 (169-218)||(834021-834070)
chr5 (164-209)||(8231071-8231116)
chr5 (164-213)||(31659582-31659631)
chr5 (164-200)||(248789-248825)
chr5 (167-203)||(9514963-9514999)
chr5 (172-220)||(19018840-19018888)
chr5 (166-202)||(19650851-19650887)
chr5 (164-212)||(33168470-33168518)
chr5 (164-211)||(38455300-38455347)
chr5 (172-218)||(1611834-1611880)
chr5 (164-218)||(6062191-6062245)
chr5 (165-215)||(17014231-17014281)
chr5 (40-82)||(39955932-39955974)
chr5 (169-206)||(7937954-7937991)
chr5 (172-217)||(31180965-31181010)
chr5 (173-213)||(3295810-3295850)
chr5 (164-204)||(20176321-20176361)
chr5 (164-212)||(28868144-28868192)
[»] chr7 (29 HSPs)
chr7 (167-218)||(15646954-15647005)
chr7 (164-218)||(25617441-25617494)
chr7 (168-218)||(39435170-39435220)
chr7 (164-213)||(21766028-21766077)
chr7 (168-220)||(10199472-10199524)
chr7 (167-214)||(1787153-1787200)
chr7 (164-214)||(5800443-5800493)
chr7 (164-214)||(46759430-46759480)
chr7 (169-218)||(581594-581643)
chr7 (165-218)||(10040600-10040653)
chr7 (164-220)||(21635041-21635097)
chr7 (164-219)||(19008225-19008280)
chr7 (165-220)||(31176888-31176943)
chr7 (164-218)||(1303238-1303292)
chr7 (164-214)||(30240660-30240709)
chr7 (167-217)||(39389721-39389770)
chr7 (165-214)||(4550508-4550557)
chr7 (164-213)||(47901927-47901976)
chr7 (169-217)||(581870-581918)
chr7 (164-220)||(20149294-20149350)
chr7 (164-220)||(48109824-48109880)
chr7 (164-211)||(19371922-19371969)
chr7 (164-211)||(42963129-42963176)
chr7 (167-213)||(9412893-9412939)
chr7 (168-205)||(22479801-22479838)
chr7 (169-213)||(5757055-5757099)
chr7 (165-217)||(8390551-8390603)
chr7 (172-220)||(39466040-39466088)
chr7 (164-204)||(40356203-40356243)
[»] chr8 (18 HSPs)
chr8 (164-218)||(4430033-4430087)
chr8 (170-220)||(38804478-38804528)
chr8 (172-214)||(11938017-11938059)
chr8 (164-218)||(18994563-18994617)
chr8 (165-218)||(5918833-5918886)
chr8 (167-218)||(26784856-26784907)
chr8 (164-214)||(1759469-1759519)
chr8 (168-218)||(11916124-11916174)
chr8 (164-214)||(13150141-13150191)
chr8 (164-204)||(15044121-15044160)
chr8 (167-211)||(15916926-15916970)
chr8 (172-214)||(18279191-18279233)
chr8 (168-214)||(27837753-27837799)
chr8 (166-219)||(3825395-3825448)
chr8 (169-217)||(5625967-5626015)
chr8 (168-220)||(12838771-12838823)
chr8 (164-200)||(14436503-14436539)
chr8 (166-214)||(15898963-15899011)
[»] chr1 (42 HSPs)
chr1 (165-227)||(15597531-15597593)
chr1 (165-218)||(34011037-34011090)
chr1 (167-214)||(5880743-5880790)
chr1 (164-218)||(10729246-10729300)
chr1 (164-214)||(11842800-11842850)
chr1 (164-204)||(37705670-37705710)
chr1 (167-218)||(5965569-5965620)
chr1 (164-215)||(15470661-15470712)
chr1 (164-227)||(27926631-27926694)
chr1 (164-218)||(26342847-26342901)
chr1 (164-214)||(46880213-46880263)
chr1 (175-220)||(650142-650187)
chr1 (167-220)||(50944450-50944503)
chr1 (164-200)||(4968856-4968892)
chr1 (177-217)||(9971887-9971927)
chr1 (173-217)||(34749026-34749070)
chr1 (165-205)||(44921755-44921795)
chr1 (168-216)||(49162919-49162967)
chr1 (164-211)||(33933961-33934008)
chr1 (164-219)||(40368202-40368256)
chr1 (169-218)||(1531071-1531121)
chr1 (172-214)||(1581027-1581069)
chr1 (164-214)||(8574243-8574293)
chr1 (167-213)||(15476624-15476670)
chr1 (170-204)||(20906968-20907002)
chr1 (176-214)||(27307624-27307662)
chr1 (167-209)||(43723708-43723750)
chr1 (168-218)||(47402461-47402511)
chr1 (164-213)||(11345133-11345182)
chr1 (169-210)||(12780433-12780474)
chr1 (168-213)||(16424684-16424729)
chr1 (169-214)||(25821962-25822007)
chr1 (173-214)||(44648438-44648479)
chr1 (167-220)||(44667964-44668017)
chr1 (168-212)||(2666375-2666419)
chr1 (166-214)||(4242263-4242311)
chr1 (169-213)||(9822457-9822501)
chr1 (164-212)||(11409177-11409225)
chr1 (165-205)||(23655233-23655273)
chr1 (164-220)||(24004843-24004899)
chr1 (170-218)||(40808574-40808622)
chr1 (168-200)||(50946020-50946052)
[»] chr4 (23 HSPs)
chr4 (165-218)||(20702719-20702772)
chr4 (164-220)||(5720230-5720286)
chr4 (164-211)||(17702659-17702706)
chr4 (164-220)||(23091131-23091187)
chr4 (164-214)||(161001-161051)
chr4 (165-211)||(669829-669875)
chr4 (169-215)||(37143614-37143660)
chr4 (167-212)||(5190629-5190674)
chr4 (165-218)||(7438071-7438124)
chr4 (164-220)||(5499199-5499255)
chr4 (172-220)||(17702387-17702435)
chr4 (164-220)||(26088916-26088971)
chr4 (164-215)||(11064306-11064357)
chr4 (167-214)||(35519269-35519316)
chr4 (164-211)||(37143138-37143185)
chr4 (164-214)||(35034636-35034685)
chr4 (169-218)||(23986111-23986160)
chr4 (167-220)||(35447490-35447543)
chr4 (168-220)||(10128619-10128671)
chr4 (172-212)||(15849755-15849795)
chr4 (164-212)||(21122420-21122468)
chr4 (164-200)||(34659435-34659471)
chr4 (164-204)||(37013133-37013173)
[»] scaffold0707 (1 HSPs)
scaffold0707 (167-215)||(196-244)
[»] chr6 (19 HSPs)
chr6 (167-215)||(33573663-33573711)
chr6 (164-213)||(32531312-32531361)
chr6 (167-215)||(9894247-9894295)
chr6 (169-211)||(10587658-10587700)
chr6 (168-218)||(12169696-12169746)
chr6 (168-218)||(24062809-24062859)
chr6 (168-220)||(21104758-21104810)
chr6 (164-219)||(4996722-4996777)
chr6 (172-211)||(10343228-10343267)
chr6 (167-218)||(17264146-17264197)
chr6 (164-195)||(22534902-22534933)
chr6 (168-219)||(26251765-26251816)
chr6 (164-215)||(28592858-28592909)
chr6 (175-209)||(1212059-1212093)
chr6 (164-217)||(1190713-1190765)
chr6 (167-208)||(5442438-5442479)
chr6 (173-214)||(6874952-6874993)
chr6 (166-214)||(2441635-2441683)
chr6 (169-209)||(32349216-32349256)
[»] scaffold0330 (1 HSPs)
scaffold0330 (169-218)||(18683-18732)
[»] scaffold0240 (1 HSPs)
scaffold0240 (169-218)||(2701-2750)
[»] scaffold0068 (1 HSPs)
scaffold0068 (167-218)||(57439-57490)
[»] scaffold0268 (1 HSPs)
scaffold0268 (168-214)||(21407-21453)
[»] scaffold0123 (1 HSPs)
scaffold0123 (164-218)||(30666-30720)
[»] scaffold0649 (1 HSPs)
scaffold0649 (167-220)||(8249-8302)
[»] scaffold0036 (1 HSPs)
scaffold0036 (167-215)||(61544-61592)
[»] scaffold1379 (1 HSPs)
scaffold1379 (165-220)||(1483-1538)
[»] scaffold0229 (1 HSPs)
scaffold0229 (175-209)||(13221-13255)
[»] scaffold0294 (1 HSPs)
scaffold0294 (166-214)||(1735-1783)
[»] scaffold0005 (1 HSPs)
scaffold0005 (164-212)||(254695-254743)


Alignment Details
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 164 - 343
Target Start/End: Complemental strand, 42057209 - 42057034
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcacatcgctagtcatgtataaagatttaaaagactataaaaatcaagn 263  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||   |||||||||||||||||||||||||||| | |||||||||||     
T  42057209 caccgttcataattttcaaacgttagcgcaataaaaagagcgaaaagacgggca---cgctagtcatgtataaagatttaaaagattgtaaaaatcaagt 42057113  T
Q  264 nnnnnnnagatgtcaaaatttttcaagtnnnnnnnnnnnnnttgcacttgaaatttaggctttaatacattgttattcta 343  Q
           |||||||||||| ||||||||             |||||||||||||||||||||||||||||||||||||||    
T  42057112 tttttttagatgtcaaaatgtttcaagt-gaaaaaaaaaaattgcacttgaaatttaggctttaatacattgttattcta 42057034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 9192042 - 9191988
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    |||||||||||||||||||||||||||||||| ||| |||| |||||||||||||    
T  9192042 caccgttcataattttcaaacgttagcgcaataaaatgagccaaaagacgggcac 9191988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 41014472 - 41014519
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaaga 211  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||    
T  41014472 caccgttcataattttcaaacgttagcgcaataaaaagagcggaaaga 41014519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 15265766 - 15265820
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    ||||| |||||||||||||||||||||| ||| ||||||||| ||||||||||||    
T  15265766 caccgctcataattttcaaacgttagcgtaataaaaagagcggaaagacgggcac 15265820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 41633373 - 41633427
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    |||||||||||||||||||||||||||||||| ||||| ||| ||||||| ||||    
T  41633373 caccgttcataattttcaaacgttagcgcaataaaaagtgcggaaagacgagcac 41633427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 13450352 - 13450401
Alignment:
Q  169 ttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    |||||||||||||||| |||||||||| ||||||||| ||||||||||||    
T  13450352 ttcataattttcaaacattagcgcaataaaaagagcggaaagacgggcac 13450401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 44019917 - 44019864
Alignment:
Q  165 accgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    |||||| |||||||||||||||| ||||||| ||||||||| ||||||||||||    
T  44019917 accgttaataattttcaaacgttggcgcaataaaaagagcggaaagacgggcac 44019864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 8875331 - 8875285
Alignment:
Q  172 ataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    |||||||||||| ||||||||||| ||||||||| ||||||||||||    
T  8875331 ataattttcaaatgttagcgcaataaaaagagcggaaagacgggcac 8875285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 13594127 - 13594086
Alignment:
Q  172 ataattttcaaacgttagcgcaattaaaagagcgaaaagacg 213  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  13594127 ataattttcaaacgttagcgcaataaaaagagcggaaagacg 13594086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 205
Target Start/End: Original strand, 21839803 - 21839840
Alignment:
Q  168 gttcataattttcaaacgttagcgcaattaaaagagcg 205  Q
    |||||||||||||||||||||||||||| |||||||||    
T  21839803 gttcataattttcaaacgttagcgcaataaaaagagcg 21839840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 21885203 - 21885154
Alignment:
Q  169 ttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    ||||||||||||||||||||| ||||| ||||||||  ||||||||||||    
T  21885203 ttcataattttcaaacgttagagcaataaaaagagcagaaagacgggcac 21885154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 27359905 - 27359860
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaa 209  Q
    ||||||| |||||||||||| ||||||||||| |||||||||||||    
T  27359905 caccgttaataattttcaaatgttagcgcaataaaaagagcgaaaa 27359860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 34753399 - 34753452
Alignment:
Q  165 accgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    |||||||||||||||||||| |||||| ||| ||||||||  ||||||||||||    
T  34753399 accgttcataattttcaaacattagcgtaataaaaagagcagaaagacgggcac 34753452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 14371597 - 14371640
Alignment:
Q  177 tttcaaacgttagcgcaattaaaagagcgaaaagacgggcacat 220  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||||    
T  14371597 tttcaaacgttagcgcaataaaaagagtgaaaagacgagcacat 14371640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 17373853 - 17373896
Alignment:
Q  169 ttcataattttcaaacgttagcgcaattaaaagagcgaaaagac 212  Q
    ||||||||||||||||||||| ||||| |||| |||||||||||    
T  17373853 ttcataattttcaaacgttagtgcaataaaaatagcgaaaagac 17373896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 209
Target Start/End: Complemental strand, 20579322 - 20579287
Alignment:
Q  174 aattttcaaacgttagcgcaattaaaagagcgaaaa 209  Q
    |||||||||||||||||||||| |||||||||||||    
T  20579322 aattttcaaacgttagcgcaataaaaagagcgaaaa 20579287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 34063422 - 34063469
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaaga 211  Q
    |||||| ||||||||| ||||||||||| ||| |||||||||||||||    
T  34063422 caccgtacataattttgaaacgttagcgtaataaaaagagcgaaaaga 34063469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 42060279 - 42060229
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    ||||||| |||||||| ||||||||||||||| |||||| || ||||||||    
T  42060279 caccgttaataattttgaaacgttagcgcaataaaaagatcggaaagacgg 42060229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 9169947 - 9169992
Alignment:
Q  167 cgttcataattttcaaacgttagcgcaattaaaagagcgaaaagac 212  Q
    ||||||||||||| ||||||||||||||| ||||||| | ||||||    
T  9169947 cgttcataatttttaaacgttagcgcaataaaaagagtggaaagac 9169992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 22277780 - 22277727
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggca 217  Q
    ||||||||| ||||||||| | |||||||||| |||| |||| |||||||||||    
T  22277780 caccgttcaaaattttcaatctttagcgcaataaaaaaagcggaaagacgggca 22277727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 24004454 - 24004405
Alignment:
Q  169 ttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    |||| |||||||||||||| ||||||| ||||||||| |||||| |||||    
T  24004454 ttcacaattttcaaacgttggcgcaataaaaagagcggaaagacaggcac 24004405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 33134404 - 33134359
Alignment:
Q  169 ttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    |||||||||||||||| |||||||||| ||||||| | ||||||||    
T  33134404 ttcataattttcaaacattagcgcaataaaaagagtggaaagacgg 33134359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 45407197 - 45407242
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaa 209  Q
    ||||||| ||||||||||||  |||||||||| |||||||||||||    
T  45407197 caccgttaataattttcaaatattagcgcaataaaaagagcgaaaa 45407242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 14706464 - 14706512
Alignment:
Q  172 ataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcacat 220  Q
    ||||||| || ||||||||||||| ||||||||| |||||||| |||||    
T  14706464 ataatttacacacgttagcgcaataaaaagagcggaaagacggacacat 14706512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 200
Target Start/End: Complemental strand, 24004966 - 24004934
Alignment:
Q  168 gttcataattttcaaacgttagcgcaattaaaa 200  Q
    ||||||||||||||||||||| |||||||||||    
T  24004966 gttcataattttcaaacgttaacgcaattaaaa 24004934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 25915095 - 25915055
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagc 204  Q
    ||||||| |||||||||||||||||||||||| | ||||||    
T  25915095 caccgtttataattttcaaacgttagcgcaataataagagc 25915055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 29462882 - 29462938
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcacat 220  Q
    |||| ||||||||||||||| ||||| ||| |  ||||||||||||||||| |||||    
T  29462882 caccattcataattttcaaatgttagtgcactataaagagcgaaaagacggacacat 29462938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 35916904 - 35916948
Alignment:
Q  167 cgttcataattttcaaacgttagcgcaattaaaagagcgaaaaga 211  Q
    ||||| |||||||||||||||| |||||| ||||||||| |||||    
T  35916904 cgttcctaattttcaaacgttaacgcaataaaaagagcggaaaga 35916948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 200
Target Start/End: Complemental strand, 36817386 - 36817354
Alignment:
Q  168 gttcataattttcaaacgttagcgcaattaaaa 200  Q
    |||||||||||||||||||||||||||| ||||    
T  36817386 gttcataattttcaaacgttagcgcaataaaaa 36817354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 38147818 - 38147874
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcacat 220  Q
    ||||||| |||||||||||| |||| |||||| ||| ||||| |||||||| |||||    
T  38147818 caccgttaataattttcaaatgttaacgcaataaaaggagcggaaagacggacacat 38147874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 164 - 343
Target Start/End: Original strand, 3895096 - 3895273
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcacatcgctagtcatgtataaagatttaaaagactataaaaatcaagn 263  Q
    ||||||| |||  ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||     
T  3895096 caccgtttatagatttcaaacgttagcgcaataaaaagagcgaaaagacggacacatcgctagtcatgtataaagatttaaaagattgtaaaaatcaagt 3895195  T
Q  264 nnnnnnnagatgtcaaaatttttcaagtnnnnnnnnnnnnnttgcacttgaaatttaggctttaatacattgttattcta 343  Q
           ||||||||||||||||||| |             |||||||||||||||||||||||||||||||||||||||    
T  3895196 tttttttagatgtcaaaatttttcaatt--gaaaaaaaaaattgcacttgaaatttaggctttaatacattgttattcta 3895273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 265159 - 265212
Alignment:
Q  165 accgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    ||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||    
T  265159 accgttcataactttcaaacgttagcgcaataaaaagagcggaaagacgggcac 265212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 7639654 - 7639708
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    |||| ||||||||||||||||||||||||||| ||||||||| |||||| |||||    
T  7639654 caccattcataattttcaaacgttagcgcaataaaaagagcggaaagacaggcac 7639708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 42896682 - 42896632
Alignment:
Q  168 gttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    |||||||||||| ||||||||||||||| ||||||||| ||||||||||||    
T  42896682 gttcataattttgaaacgttagcgcaataaaaagagcggaaagacgggcac 42896632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 49758291 - 49758237
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    |||| |||| ||||||||||||||| |||||| ||||||||||||||||||||||    
T  49758291 cacccttcaaaattttcaaacgttaacgcaataaaaagagcgaaaagacgggcac 49758237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 50099206 - 50099256
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    |||||||||||||||| ||||||||| ||||| ||||||||||||||||||    
T  50099206 caccgttcataatttttaaacgttagtgcaataaaaagagcgaaaagacgg 50099256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 13043186 - 13043141
Alignment:
Q  168 gttcataattttcaaacgttagcgcaattaaaagagcgaaaagacg 213  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||    
T  13043186 gttcataattttcaaacgttagcgcaataaaaagagcggaaagacg 13043141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 13051263 - 13051218
Alignment:
Q  168 gttcataattttcaaacgttagcgcaattaaaagagcgaaaagacg 213  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||    
T  13051263 gttcataattttcaaacgttagcgcaataaaaagagcggaaagacg 13051218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 17438630 - 17438582
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagac 212  Q
    ||||||||||||||||||||| |||||||||  ||||||||||||||||    
T  17438630 caccgttcataattttcaaacattagcgcaacaaaaagagcgaaaagac 17438582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 18461181 - 18461142
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagag 203  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  18461181 caccgttcataattttcaaacgttagcgcaataaaaagag 18461142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 22177561 - 22177608
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaaga 211  Q
    ||||||||||||||||||||||||| |||||| ||||||||| |||||    
T  22177561 caccgttcataattttcaaacgttaacgcaataaaaagagcggaaaga 22177608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 26130972 - 26131027
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagc-gaaaagacgggcac 218  Q
    |||||||||||||| ||||||||||||||||| |||||||| ||||||||| ||||    
T  26130972 caccgttcataattatcaaacgttagcgcaataaaaagagcggaaaagacgagcac 26131027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 19245528 - 19245574
Alignment:
Q  168 gttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    |||||||||||| ||||||||||||||| ||||||||| ||||||||    
T  19245528 gttcataatttttaaacgttagcgcaataaaaagagcggaaagacgg 19245574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 22102612 - 22102666
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    ||||||||||||||||||||||||| |||||| ||||||| | ||||| ||||||    
T  22102612 caccgttcataattttcaaacgttaacgcaataaaaagagtggaaagaggggcac 22102666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 5811995 - 5811942
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggca 217  Q
    ||||||| |||||||||||| ||||||| ||| ||||||||| |||||||||||    
T  5811995 caccgttaataattttcaaatgttagcgaaataaaaagagcggaaagacgggca 5811942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 54768140 - 54768185
Alignment:
Q  167 cgttcataattttcaaacgttagcgcaattaaaagagcgaaaagac 212  Q
    ||||||||||||||||||||||  ||||| ||||||||||||||||    
T  54768140 cgttcataattttcaaacgttaatgcaataaaaagagcgaaaagac 54768185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 285714 - 285666
Alignment:
Q  165 accgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacg 213  Q
    |||||||||||||||||||||||| |||||| |||| || |||||||||    
T  285714 accgttcataattttcaaacgttaacgcaataaaaatagtgaaaagacg 285666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 41817387 - 41817427
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagc 204  Q
    ||||||||| |||||||||||||||||||||| ||||||||    
T  41817387 caccgttcaaaattttcaaacgttagcgcaataaaaagagc 41817427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 5492874 - 5492835
Alignment:
Q  165 accgttcataattttcaaacgttagcgcaattaaaagagc 204  Q
    |||||||||||||||||||| |||||||||| ||||||||    
T  5492874 accgttcataattttcaaactttagcgcaataaaaagagc 5492835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 9350321 - 9350360
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagag 203  Q
    |||| ||||||||||||||||||||||||||| |||||||    
T  9350321 caccattcataattttcaaacgttagcgcaataaaaagag 9350360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 9862262 - 9862309
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaaga 211  Q
    |||||||||||||||||||||||||||| ||| ||||||  |||||||    
T  9862262 caccgttcataattttcaaacgttagcgtaataaaaagatagaaaaga 9862309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 19225119 - 19225158
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagag 203  Q
    ||||||||||||||||||||||||| |||||| |||||||    
T  19225119 caccgttcataattttcaaacgttaacgcaataaaaagag 19225158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 27947952 - 27948003
Alignment:
Q  167 cgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    |||| |||||||||||| ||||||||||  ||||||||| ||||||||||||    
T  27947952 cgtttataattttcaaatgttagcgcaacaaaaagagcggaaagacgggcac 27948003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 5907194 - 5907140
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    ||||| |||||||||| ||||||||||| ||| ||||||||| ||||| ||||||    
T  5907194 caccgctcataattttgaaacgttagcgtaataaaaagagcggaaagatgggcac 5907140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 21790367 - 21790321
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaag 210  Q
    ||||| |||||||||||||||||||| ||||| ||||||||| ||||    
T  21790367 caccgctcataattttcaaacgttagtgcaataaaaagagcggaaag 21790321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 22152459 - 22152509
Alignment:
Q  168 gttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    ||||||||||||||||||||| | |||| ||||||||| ||| ||||||||    
T  22152459 gttcataattttcaaacgttaccacaataaaaagagcggaaaaacgggcac 22152509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 22258484 - 22258430
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    ||||||| |||||||||| ||||||| | ||| ||||||| ||||||||||||||    
T  22258484 caccgttaataattttcatacgttagtgaaataaaaagagagaaaagacgggcac 22258430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 25478996 - 25478954
Alignment:
Q  172 ataattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    ||||||||||||||| |||||||| ||||||||| ||||||||    
T  25478996 ataattttcaaacgtcagcgcaataaaaagagcggaaagacgg 25478954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 35379563 - 35379609
Alignment:
Q  168 gttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    ||||||||  |||||||||||||||||| ||||||||| ||||||||    
T  35379563 gttcataaccttcaaacgttagcgcaataaaaagagcggaaagacgg 35379609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 10438466 - 10438515
Alignment:
Q  167 cgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggc 216  Q
    ||||||||||||| |||| |||| ||||| ||||||||| ||||||||||    
T  10438466 cgttcataatttttaaactttagtgcaataaaaagagcggaaagacgggc 10438515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 18388655 - 18388610
Alignment:
Q  167 cgttcataattttcaaacgttagcgcaattaaaagagcgaaaagac 212  Q
    |||| |||||||||||||||||| ||||| ||||||||| ||||||    
T  18388655 cgtttataattttcaaacgttagggcaataaaaagagcggaaagac 18388610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 21091849 - 21091804
Alignment:
Q  169 ttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    ||||||||||||||||||||| ||||| ||||||| | ||||||||    
T  21091849 ttcataattttcaaacgttagtgcaataaaaagagaggaaagacgg 21091804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 25842533 - 25842586
Alignment:
Q  165 accgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    |||||||||||||||||| |||||| | ||| ||||||| | ||||||||||||    
T  25842533 accgttcataattttcaaccgttagtgtaataaaaagagtggaaagacgggcac 25842586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 46931786 - 46931749
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaag 201  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  46931786 caccgttcataattttcaaacgttagcgtaataaaaag 46931749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 796651 - 796695
Alignment:
Q  167 cgttcataattttcaaacgttagcgcaattaaaagagcgaaaaga 211  Q
    |||||| ||||||| |||||||||||||| ||||||||| |||||    
T  796651 cgttcaaaattttcgaacgttagcgcaataaaaagagcggaaaga 796695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 4615412 - 4615357
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcacat 220  Q
    |||||||| ||||||||||||||||||  || ||||| || ||||||||||||||||    
T  4615412 caccgttcgtaattttcaaacgttagcataa-taaaaaagtgaaaagacgggcacat 4615357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 12141379 - 12141419
Alignment:
Q  165 accgttcataattttcaaacgttagcgcaattaaaagagcg 205  Q
    |||||||||||||| |||||||||||||||| ||| |||||    
T  12141379 accgttcataatttgcaaacgttagcgcaataaaatgagcg 12141419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 18540431 - 18540391
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagc 204  Q
    |||||||||||||||| ||| ||||||||||| ||||||||    
T  18540431 caccgttcataatttttaaatgttagcgcaataaaaagagc 18540391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 21495759 - 21495803
Alignment:
Q  169 ttcataattttcaaacgttagcgcaattaaaagagcgaaaagacg 213  Q
    ||||||||||||||| |||||| |||| ||||||| |||||||||    
T  21495759 ttcataattttcaaatgttagcacaataaaaagagtgaaaagacg 21495803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 39903799 - 39903759
Alignment:
Q  165 accgttcataattttcaaacgttagcgcaattaaaagagcg 205  Q
    |||||| |||||||||||||||||| ||||| |||||||||    
T  39903799 accgtttataattttcaaacgttagtgcaataaaaagagcg 39903759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 45879993 - 45880033
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagc 204  Q
    |||||||||||||||||||| ||||||||||| ||| ||||    
T  45879993 caccgttcataattttcaaatgttagcgcaataaaacgagc 45880033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 936320 - 936373
Alignment:
Q  165 accgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  936320 accgttcataattttcaaacgttagcgcaataaaaagagcggaaagacgggcac 936373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 35272229 - 35272279
Alignment:
Q  170 tcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcacat 220  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  35272229 tcataattttcaaacgttagcgcaataaaaagagcgaaaagatgggcacat 35272279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 16313452 - 16313497
Alignment:
Q  169 ttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  16313452 ttcataattttcaaacgttagcgcaataaaaagagcgaaaagacgg 16313497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 42506447 - 42506499
Alignment:
Q  168 gttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcacat 220  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||| ||||||    
T  42506447 gttcatgattttcaaacgttagcgcaataaaaagagcgaaaagacgagcacat 42506499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 9524091 - 9524141
Alignment:
Q  168 gttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    |||||||||||||||||||||||||||| ||||||||| |||||| |||||    
T  9524091 gttcataattttcaaacgttagcgcaataaaaagagcggaaagacaggcac 9524141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 14000663 - 14000717
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    ||||||||||||||||||||||||| |||||| ||||||||| ||||||| ||||    
T  14000663 caccgttcataattttcaaacgttaacgcaataaaaagagcggaaagacgagcac 14000717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 28766484 - 28766540
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcacat 220  Q
    |||||||||||||||||||| ||||  ||||| ||||||||| ||||||||||||||    
T  28766484 caccgttcataattttcaaaagttaatgcaataaaaagagcggaaagacgggcacat 28766540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 39956005 - 39956053
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagac 212  Q
    |||||||||||||||||||| ||||||||||| ||||||||| ||||||    
T  39956005 caccgttcataattttcaaatgttagcgcaataaaaagagcggaaagac 39956053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 19929638 - 19929692
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    ||||||||||||||||||||||||| | |||| ||| ||||| ||||||||||||    
T  19929638 caccgttcataattttcaaacgttaacacaataaaatgagcggaaagacgggcac 19929692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 23270848 - 23270902
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    ||||||| ||||||||||||| ||| |||||| ||||||||| ||||||||||||    
T  23270848 caccgtttataattttcaaactttaacgcaataaaaagagcggaaagacgggcac 23270902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 24836945 - 24836999
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    |||||||||||||||| ||| ||||||||||| ||||||||| ||||||| ||||    
T  24836945 caccgttcataatttttaaaagttagcgcaataaaaagagcggaaagacgtgcac 24836999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 28867452 - 28867406
Alignment:
Q  172 ataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    |||||||||||| ||||||||||| ||||||||| ||||||||||||    
T  28867452 ataattttcaaaggttagcgcaataaaaagagcggaaagacgggcac 28867406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 834070 - 834021
Alignment:
Q  169 ttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    |||||||||||||||||||| |||||| ||||||||| |||||| |||||    
T  834070 ttcataattttcaaacgttaacgcaataaaaagagcggaaagacaggcac 834021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 8231116 - 8231071
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaa 209  Q
    ||||||||||||||||||||||||||| |||| ||||||| |||||    
T  8231116 caccgttcataattttcaaacgttagctcaataaaaagagtgaaaa 8231071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 31659582 - 31659631
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacg 213  Q
    ||||||||||| |||||||||||||||||||| |||||| || |||||||    
T  31659582 caccgttcatatttttcaaacgttagcgcaataaaaagaacggaaagacg 31659631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 248789 - 248825
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaa 200  Q
    |||||||||||||||||||||||||||||||| ||||    
T  248789 caccgttcataattttcaaacgttagcgcaataaaaa 248825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 9514963 - 9514999
Alignment:
Q  167 cgttcataattttcaaacgttagcgcaattaaaagag 203  Q
    ||||||||||||||||||||||||||||| |||||||    
T  9514963 cgttcataattttcaaacgttagcgcaataaaaagag 9514999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 19018840 - 19018888
Alignment:
Q  172 ataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcacat 220  Q
    ||||||||||||| |||| ||||| ||||||||| ||||||||||||||    
T  19018840 ataattttcaaacattagagcaataaaaagagcggaaagacgggcacat 19018888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 202
Target Start/End: Original strand, 19650851 - 19650887
Alignment:
Q  166 ccgttcataattttcaaacgttagcgcaattaaaaga 202  Q
    |||||||||||||||||||||||||||||| ||||||    
T  19650851 ccgttcataattttcaaacgttagcgcaataaaaaga 19650887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 33168470 - 33168518
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagac 212  Q
    ||||||||||||||||||||||||| |||||| ||||||| | ||||||    
T  33168470 caccgttcataattttcaaacgttaacgcaataaaaagagtggaaagac 33168518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 38455347 - 38455300
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaaga 211  Q
    |||||||||||||||||||| ||||| ||||| ||||||||| |||||    
T  38455347 caccgttcataattttcaaatgttagtgcaataaaaagagcggaaaga 38455300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 1611880 - 1611834
Alignment:
Q  172 ataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    ||||||||||||||||||| |||| ||||||||  ||||||||||||    
T  1611880 ataattttcaaacgttagcacaataaaaagagcagaaagacgggcac 1611834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 6062191 - 6062245
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    |||||||||||||||| ||||||||||| ||| |||| |||| |||||| |||||    
T  6062191 caccgttcataatttttaaacgttagcgtaataaaaaaagcggaaagacaggcac 6062245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 17014231 - 17014281
Alignment:
Q  165 accgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacggg 215  Q
    |||||| ||||||||||||| ||||||| || ||||||| |||||||||||    
T  17014231 accgtttataattttcaaacattagcgcgataaaaagagtgaaaagacggg 17014281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 39955932 - 39955974
Alignment:
Q  40 gttatattgtattattgtcggtgtaatagataattatggttag 82  Q
    |||||||||||||||||||| || |||||||||| ||||||||    
T  39955932 gttatattgtattattgtcgttgaaatagataatcatggttag 39955974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 7937991 - 7937954
Alignment:
Q  169 ttcataattttcaaacgttagcgcaattaaaagagcga 206  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  7937991 ttcataattttcaaacgttatcgcaataaaaagagcga 7937954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 31181010 - 31180965
Alignment:
Q  172 ataattttcaaacgttagcgcaattaaaagagcgaaaagacgggca 217  Q
    ||||||||||||||||| | |||| ||||||||| |||||||||||    
T  31181010 ataattttcaaacgttaactcaataaaaagagcggaaagacgggca 31180965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 3295810 - 3295850
Alignment:
Q  173 taattttcaaacgttagcgcaattaaaagagcgaaaagacg 213  Q
    |||||||||||||||||| |||| ||||||||| |||||||    
T  3295810 taattttcaaacgttagcacaataaaaagagcggaaagacg 3295850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 20176361 - 20176321
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagc 204  Q
    |||||||||||||||| ||||||||| ||||| ||||||||    
T  20176361 caccgttcataatttttaaacgttagggcaataaaaagagc 20176321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 28868192 - 28868144
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagac 212  Q
    |||| |||||||||||||||||| |||||| | ||||||||| ||||||    
T  28868192 cacctttcataattttcaaacgtcagcgcagtaaaaagagcggaaagac 28868144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 15647005 - 15646954
Alignment:
Q  167 cgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  15647005 cgttcataattttcaaacgttagcgcaataaaaagagcggaaagacgggcac 15646954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 25617441 - 25617494
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  25617441 caccgttcataattttcaaacgttagcgcaataaaaagagcg-aaagacgggcac 25617494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 39435170 - 39435220
Alignment:
Q  168 gttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  39435170 gttcataattttcaaacgttagcgcaataaaaagagcggaaagacgggcac 39435220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 21766077 - 21766028
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacg 213  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  21766077 caccgttcataattttcaaacgttagcgcaataaaaagagcggaaagacg 21766028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 10199524 - 10199472
Alignment:
Q  168 gttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcacat 220  Q
    ||||||||||||||||| |||||||||| ||||||||| ||||||||||||||    
T  10199524 gttcataattttcaaactttagcgcaataaaaagagcggaaagacgggcacat 10199472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 214
Target Start/End: Original strand, 1787153 - 1787200
Alignment:
Q  167 cgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||    
T  1787153 cgttcataattttcaaacgttaacgcaattaaaagagcggaaagacgg 1787200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 5800443 - 5800493
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    ||||||||||||||||||||| |||||||||| ||||||||| ||||||||    
T  5800443 caccgttcataattttcaaacattagcgcaataaaaagagcggaaagacgg 5800493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 46759480 - 46759430
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    |||||||||| ||||||||||||||||||||| ||||||||| ||||||||    
T  46759480 caccgttcattattttcaaacgttagcgcaataaaaagagcggaaagacgg 46759430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 581643 - 581594
Alignment:
Q  169 ttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    ||||||||||||||||||||||||||| |||| |||| ||||||||||||    
T  581643 ttcataattttcaaacgttagcgcaataaaaaaagcggaaagacgggcac 581594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 10040600 - 10040653
Alignment:
Q  165 accgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    ||||||||||||||||||| ||||||||||| ||||||||  ||||||||||||    
T  10040600 accgttcataattttcaaatgttagcgcaataaaaagagcagaaagacgggcac 10040653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 21635041 - 21635097
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcacat 220  Q
    ||||||||||||| |||||| ||||||||||| ||||||||| ||||||| ||||||    
T  21635041 caccgttcataatattcaaatgttagcgcaataaaaagagcggaaagacgagcacat 21635097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 19008280 - 19008225
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcaca 219  Q
    |||||||| ||||||||||||||||||||||| |||| || | |||||||||||||    
T  19008280 caccgttcttaattttcaaacgttagcgcaataaaaatagtggaaagacgggcaca 19008225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 220
Target Start/End: Original strand, 31176888 - 31176943
Alignment:
Q  165 accgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcacat 220  Q
    |||||| |||||||||||||||||||| ||| |||||||  |||||||||||||||    
T  31176888 accgttaataattttcaaacgttagcgtaataaaaagagtaaaaagacgggcacat 31176943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 1303292 - 1303238
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    |||| |||||||||||||||||| |||||||| ||||||||| ||| ||||||||    
T  1303292 caccattcataattttcaaacgtcagcgcaataaaaagagcggaaaaacgggcac 1303238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 30240709 - 30240660
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    ||||||||||||||||||| ||||||| |||| ||||||||||||||||||    
T  30240709 caccgttcataattttcaa-cgttagcacaataaaaagagcgaaaagacgg 30240660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 39389721 - 39389770
Alignment:
Q  167 cgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggca 217  Q
    |||||||||||||||||||||||||||| ||||| | ||||||||||||||    
T  39389721 cgttcataattttcaaacgttagcgcaa-taaaaaaacgaaaagacgggca 39389770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 4550508 - 4550557
Alignment:
Q  165 accgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    ||||||||||||||||||||||||  ||||| ||||||||| ||||||||    
T  4550508 accgttcataattttcaaacgttaaggcaataaaaagagcggaaagacgg 4550557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 47901927 - 47901976
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacg 213  Q
    |||||||||||||||| ||| ||||||||||| ||||||||| |||||||    
T  47901927 caccgttcataatttttaaatgttagcgcaataaaaagagcggaaagacg 47901976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 581918 - 581870
Alignment:
Q  169 ttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggca 217  Q
    ||||||||||||||||||| ||||||| |||| |||| |||||||||||    
T  581918 ttcataattttcaaacgttggcgcaataaaaaaagcggaaagacgggca 581870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 20149350 - 20149294
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcacat 220  Q
    |||||||||||||||||||||||||| || || ||||||| | ||||||||| ||||    
T  20149350 caccgttcataattttcaaacgttagtgcgataaaaagagtggaaagacgggtacat 20149294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 48109824 - 48109880
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcacat 220  Q
    ||||||||||||||||||||| ||| | |||| |||| ||||||||||| |||||||    
T  48109824 caccgttcataattttcaaacattaacacaataaaaacagcgaaaagacaggcacat 48109880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 19371922 - 19371969
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaaga 211  Q
    |||||||||||||||| ||||||| ||||||| ||||||||| |||||    
T  19371922 caccgttcataattttgaaacgttggcgcaataaaaagagcggaaaga 19371969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 42963176 - 42963129
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaaga 211  Q
    |||||||||||||||||||| | ||||||||| ||||||||| |||||    
T  42963176 caccgttcataattttcaaatgctagcgcaataaaaagagcggaaaga 42963129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 9412893 - 9412939
Alignment:
Q  167 cgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacg 213  Q
    ||||||||||||||||||| ||||||||| ||||||||  |||||||    
T  9412893 cgttcataattttcaaacgatagcgcaataaaaagagcagaaagacg 9412939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 205
Target Start/End: Original strand, 22479801 - 22479838
Alignment:
Q  168 gttcataattttcaaacgttagcgcaattaaaagagcg 205  Q
    |||||||||||||||| ||||||||||| |||||||||    
T  22479801 gttcataattttcaaatgttagcgcaataaaaagagcg 22479838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 5757099 - 5757055
Alignment:
Q  169 ttcataattttcaaacgttagcgcaattaaaagagcgaaaagacg 213  Q
    ||||||||||||||||||||| ||||  ||||||||| |||||||    
T  5757099 ttcataattttcaaacgttagtgcaacaaaaagagcggaaagacg 5757055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 8390551 - 8390603
Alignment:
Q  165 accgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggca 217  Q
    |||||||||||||||||||| |||||||||  |||| |  |||||||||||||    
T  8390551 accgttcataattttcaaacattagcgcaaaaaaaaaattgaaaagacgggca 8390603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 39466040 - 39466088
Alignment:
Q  172 ataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcacat 220  Q
    |||||||||||| |||| |||||| ||||||||  ||||||||||||||    
T  39466040 ataattttcaaaagttaacgcaataaaaagagcagaaagacgggcacat 39466088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 40356203 - 40356243
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagc 204  Q
    ||||||||||||||||||||| |||||||| | ||||||||    
T  40356203 caccgttcataattttcaaactttagcgcagtaaaaagagc 40356243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 4430087 - 4430033
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||    
T  4430087 caccgttcataattttcaaacgttagcacaataaaaagagcgaaaagacgagcac 4430033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 38804528 - 38804478
Alignment:
Q  170 tcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcacat 220  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  38804528 tcataattttcaaacgttagcgcaataaaaagagcggaaagacgggcacat 38804478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 11938017 - 11938059
Alignment:
Q  172 ataattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  11938017 ataattttcaaacgttagcgcaataaaaagagcgaaaagacgg 11938059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 18994617 - 18994563
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    |||||||||||||||||||||||  ||||||| ||||||||| ||||||||||||    
T  18994617 caccgttcataattttcaaacgtcggcgcaataaaaagagcggaaagacgggcac 18994563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 5918833 - 5918886
Alignment:
Q  165 accgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    |||||| |||||||||||||||||||||||| ||||||||| ||||||| ||||    
T  5918833 accgttaataattttcaaacgttagcgcaataaaaagagcggaaagacgagcac 5918886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 26784856 - 26784907
Alignment:
Q  167 cgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    |||||||||||||||||| |||| ||||| ||||||||| ||||||||||||    
T  26784856 cgttcataattttcaaacattagagcaataaaaagagcggaaagacgggcac 26784907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 1759519 - 1759469
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    |||||||| ||||||||||||||||||||||| ||||||||| | ||||||    
T  1759519 caccgttcttaattttcaaacgttagcgcaataaaaagagcggagagacgg 1759469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 11916174 - 11916124
Alignment:
Q  168 gttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    |||||| |||||||||||||| || ||| ||||||||||||||||||||||    
T  11916174 gttcatcattttcaaacgttaacgtaataaaaagagcgaaaagacgggcac 11916124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 13150141 - 13150191
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    ||||||| ||||||||||||||||| |||||| ||||||||| ||||||||    
T  13150141 caccgttaataattttcaaacgttaacgcaataaaaagagcggaaagacgg 13150191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 15044160 - 15044121
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagc 204  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  15044160 caccgttcataattttcaaacgttagcgcaa-taaaagagc 15044121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 15916970 - 15916926
Alignment:
Q  167 cgttcataattttcaaacgttagcgcaattaaaagagcgaaaaga 211  Q
    ||||||||||||||||||||||||| ||| ||||||||| |||||    
T  15916970 cgttcataattttcaaacgttagcggaataaaaagagcggaaaga 15916926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 18279233 - 18279191
Alignment:
Q  172 ataattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    ||||||||||||||||| |||||| ||||||||||||| ||||    
T  18279233 ataattttcaaacgttaacgcaataaaaagagcgaaaacacgg 18279191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 27837753 - 27837799
Alignment:
Q  168 gttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    |||||||||||||||||| ||||||||| ||||||||| | ||||||    
T  27837753 gttcataattttcaaacgctagcgcaataaaaagagcggagagacgg 27837799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 3825395 - 3825448
Alignment:
Q  166 ccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcaca 219  Q
    |||||||||||||| |||||||| |||||| |||||| || ||||| |||||||    
T  3825395 ccgttcataatttttaaacgttaacgcaataaaaagaacggaaagatgggcaca 3825448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 5626015 - 5625967
Alignment:
Q  169 ttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggca 217  Q
    |||||| |||||||||||||||| ||| |||| |||| |||||||||||    
T  5626015 ttcatagttttcaaacgttagcgtaataaaaatagcggaaagacgggca 5625967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 12838771 - 12838823
Alignment:
Q  168 gttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcacat 220  Q
    ||||||||||||||||| ||| |||||| ||||||| | |||||||| |||||    
T  12838771 gttcataattttcaaacattaacgcaataaaaagagaggaaagacggacacat 12838823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 14436539 - 14436503
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaa 200  Q
    ||||||||||||| | |||||||||||||||||||||    
T  14436539 caccgttcataatatgcaaacgttagcgcaattaaaa 14436503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 15898963 - 15899011
Alignment:
Q  166 ccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||||||||    
T  15898963 ccgtttataattttcaaacgttagtgcaacaaaaagagcggaaagacgg 15899011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 15597531 - 15597593
Alignment:
Q  165 accgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcacatcgctagt 227  Q
    ||||||||||||||||||| ||||||||| | |||| |||||||||||||||||||| |||||    
T  15597531 accgttcataattttcaaaagttagcgcactaaaaatagcgaaaagacgggcacatcactagt 15597593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 34011090 - 34011037
Alignment:
Q  165 accgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    ||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||    
T  34011090 accgttcataattttcaaacgttagtgcaataaaaagagcggaaagacgggcac 34011037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 5880790 - 5880743
Alignment:
Q  167 cgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||    
T  5880790 cgttcataattttcaaacgttaacgcaataaaaagagcgaaaagacgg 5880743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 10729300 - 10729246
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    ||||||||||||||| |||||||||||||||| ||||||||| ||||||| ||||    
T  10729300 caccgttcataatttccaaacgttagcgcaataaaaagagcggaaagacgtgcac 10729246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 11842850 - 11842800
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    ||||||||||||||||||||||||| |||||| ||||||||| ||||||||    
T  11842850 caccgttcataattttcaaacgttaacgcaataaaaagagcggaaagacgg 11842800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 37705710 - 37705670
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagc 204  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  37705710 caccgttcataattttcaaacgttagcgcaataaaaagagc 37705670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 5965620 - 5965569
Alignment:
Q  167 cgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    ||||||||||||||||||||||| ||||| ||||||||  ||||||||||||    
T  5965620 cgttcataattttcaaacgttagagcaataaaaagagcagaaagacgggcac 5965569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 15470661 - 15470712
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacggg 215  Q
    |||| |||||| |||||||||||||||||||| ||||||||| |||||||||    
T  15470661 caccattcatagttttcaaacgttagcgcaataaaaagagcggaaagacggg 15470712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 27926631 - 27926694
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcacatcgctagt 227  Q
    ||||||||||||| ||||||| |||||  ||| |||||||| ||||||||||||| ||||||||    
T  27926631 caccgttcataatcttcaaacattagcaaaataaaaagagcaaaaagacgggcacgtcgctagt 27926694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 26342901 - 26342847
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    ||||||||||||||||||||| |||||| ||| ||||||||||||| | ||||||    
T  26342901 caccgttcataattttcaaactttagcgtaataaaaagagcgaaaaaatgggcac 26342847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 46880213 - 46880263
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    |||||||||||||||||||||||||  ||||| ||||||||| ||||||||    
T  46880213 caccgttcataattttcaaacgttaatgcaataaaaagagcggaaagacgg 46880263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 650187 - 650142
Alignment:
Q  175 attttcaaacgttagcgcaattaaaagagcgaaaagacgggcacat 220  Q
    ||||||||| ||||||||||| ||||||||| ||||||||||||||    
T  650187 attttcaaatgttagcgcaataaaaagagcggaaagacgggcacat 650142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 50944503 - 50944450
Alignment:
Q  167 cgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcacat 220  Q
    ||||||||||||||||||||||| ||||| |||| ||||  |||||||||||||    
T  50944503 cgttcataattttcaaacgttagtgcaataaaaaaagcggtaagacgggcacat 50944450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 4968892 - 4968856
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaa 200  Q
    |||||||||||||||||||||||||||||||| ||||    
T  4968892 caccgttcataattttcaaacgttagcgcaataaaaa 4968856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 9971887 - 9971927
Alignment:
Q  177 tttcaaacgttagcgcaattaaaagagcgaaaagacgggca 217  Q
    ||||||||||||||||||| ||||||||||||||| |||||    
T  9971887 tttcaaacgttagcgcaataaaaagagcgaaaagatgggca 9971927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 34749026 - 34749070
Alignment:
Q  173 taattttcaaacgttagcgcaattaaaagagcgaaaagacgggca 217  Q
    ||||||||||||||||||||||| ||||||| | |||||||||||    
T  34749026 taattttcaaacgttagcgcaataaaaagagtggaaagacgggca 34749070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 44921795 - 44921755
Alignment:
Q  165 accgttcataattttcaaacgttagcgcaattaaaagagcg 205  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  44921795 accgttcataattttcaaacgttaccgcaataaaaagagcg 44921755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 49162919 - 49162967
Alignment:
Q  168 gttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggc 216  Q
    |||||||||||||||||||||| ||||| ||||||||| ||||| ||||    
T  49162919 gttcataattttcaaacgttagtgcaataaaaagagcggaaagaggggc 49162967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 33934008 - 33933961
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaaga 211  Q
    |||||||||||||||| ||| ||||||||||| ||||||||| |||||    
T  33934008 caccgttcataatttttaaatgttagcgcaataaaaagagcggaaaga 33933961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 40368202 - 40368256
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcaca 219  Q
    |||| |||||||||| |||| |||||||||| |||||||||| |||||||||||||    
T  40368202 cacctttcataatttacaaatgttagcgcaa-taaaagagcggaaagacgggcaca 40368256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 1531121 - 1531071
Alignment:
Q  169 ttcataattttcaaacgttagcgcaat-taaaagagcgaaaagacgggcac 218  Q
    |||||||||||||||||||||||||||  ||||||| | ||||||||||||    
T  1531121 ttcataattttcaaacgttagcgcaataaaaaagagtggaaagacgggcac 1531071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 1581069 - 1581027
Alignment:
Q  172 ataattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    ||||||||||||| |||||||||| ||||||||| ||||||||    
T  1581069 ataattttcaaactttagcgcaataaaaagagcggaaagacgg 1581027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 8574243 - 8574293
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    |||||| ||||||||||||||||||| |||||  |||||| ||||||||||    
T  8574243 caccgtgcataattttcaaacgttagtgcaatataaagagtgaaaagacgg 8574293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 15476624 - 15476670
Alignment:
Q  167 cgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacg 213  Q
    ||||||||||||||||||||||||||||| ||| || || |||||||    
T  15476624 cgttcataattttcaaacgttagcgcaataaaatgaacggaaagacg 15476670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 204
Target Start/End: Original strand, 20906968 - 20907002
Alignment:
Q  170 tcataattttcaaacgttagcgcaattaaaagagc 204  Q
    |||||||||||||||||||||||||| ||||||||    
T  20906968 tcataattttcaaacgttagcgcaataaaaagagc 20907002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 27307662 - 27307624
Alignment:
Q  176 ttttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  27307662 ttttcaaacgttagcgcaataaaaagagcggaaagacgg 27307624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 43723750 - 43723708
Alignment:
Q  167 cgttcataattttcaaacgttagcgcaattaaaagagcgaaaa 209  Q
    ||||||||||||||||||||| | ||||| |||||||||||||    
T  43723750 cgttcataattttcaaacgttggtgcaataaaaagagcgaaaa 43723708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 47402511 - 47402461
Alignment:
Q  168 gttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    ||||||||||||||||||||| |||||| ||||||| | |||||| |||||    
T  47402511 gttcataattttcaaacgttaccgcaataaaaagagtggaaagacaggcac 47402461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 11345133 - 11345182
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacg 213  Q
    |||||||||||||||| ||||||||  ||||| ||||||||| |||||||    
T  11345133 caccgttcataatttttaaacgttactgcaataaaaagagcggaaagacg 11345182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 12780433 - 12780474
Alignment:
Q  169 ttcataattttcaaacgttagcgcaattaaaagagcgaaaag 210  Q
    |||||||||||||||| ||||| |||| ||||||||||||||    
T  12780433 ttcataattttcaaaccttagcacaataaaaagagcgaaaag 12780474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 16424684 - 16424729
Alignment:
Q  168 gttcataattttcaaacgttagcgcaattaaaagagcgaaaagacg 213  Q
    |||||||||||||||||||||||||||| |||| |||  |||||||    
T  16424684 gttcataattttcaaacgttagcgcaataaaaatagctgaaagacg 16424729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 25822007 - 25821962
Alignment:
Q  169 ttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    ||||||||||||||||||||||||||| |||| |  ||||||||||    
T  25822007 ttcataattttcaaacgttagcgcaataaaaaaaatgaaaagacgg 25821962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 44648438 - 44648479
Alignment:
Q  173 taattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    |||||||||||||||||| |||| ||||||||| ||||||||    
T  44648438 taattttcaaacgttagcacaataaaaagagcggaaagacgg 44648479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 44667964 - 44668017
Alignment:
Q  167 cgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcacat 220  Q
    ||||||||||||| ||||||||| ||||| |||||| || |||||||| |||||    
T  44667964 cgttcataatttttaaacgttagtgcaataaaaagaacggaaagacggacacat 44668017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 2666375 - 2666419
Alignment:
Q  168 gttcataattttcaaacgttagcgcaattaaaagagcgaaaagac 212  Q
    ||||||||||||||||||||| |||||| ||||||| | ||||||    
T  2666375 gttcataattttcaaacgttatcgcaataaaaagagtggaaagac 2666419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 4242263 - 4242311
Alignment:
Q  166 ccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    ||||| |||||||||||||||||||  ||| ||||||||| ||||||||    
T  4242263 ccgttaataattttcaaacgttagcataataaaaagagcggaaagacgg 4242311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 9822457 - 9822501
Alignment:
Q  169 ttcataattttcaaacgttagcgcaattaaaagagcgaaaagacg 213  Q
    ||||||||||| ||||||||||||||| ||| ||||| |||||||    
T  9822457 ttcataatttttaaacgttagcgcaataaaatgagcggaaagacg 9822501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 11409177 - 11409225
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagac 212  Q
    |||| |||||||||||||||| ||| |||||| ||||||||| ||||||    
T  11409177 caccattcataattttcaaactttatcgcaataaaaagagcggaaagac 11409225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 23655273 - 23655233
Alignment:
Q  165 accgttcataattttcaaacgttagcgcaattaaaagagcg 205  Q
    |||||| |||||||| |||||||| ||||||||||||||||    
T  23655273 accgtttataatttttaaacgttaacgcaattaaaagagcg 23655233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 24004899 - 24004843
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcacat 220  Q
    |||| ||||||||||||||| ||||||||||| |||  |||| |||||| |||||||    
T  24004899 caccattcataattttcaaaagttagcgcaataaaataagcggaaagacaggcacat 24004843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 40808622 - 40808574
Alignment:
Q  170 tcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    |||||||||||||||||||||| ||| |||||| |||||| | ||||||    
T  40808622 tcataattttcaaacgttagcgtaataaaaagaacgaaaaaatgggcac 40808574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 200
Target Start/End: Complemental strand, 50946052 - 50946020
Alignment:
Q  168 gttcataattttcaaacgttagcgcaattaaaa 200  Q
    |||||||||||||||||||||||||||| ||||    
T  50946052 gttcataattttcaaacgttagcgcaataaaaa 50946020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 20702719 - 20702772
Alignment:
Q  165 accgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    |||||| |||||||||||||||||||||||| ||||||||| ||||||||||||    
T  20702719 accgttaataattttcaaacgttagcgcaataaaaagagcggaaagacgggcac 20702772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 5720286 - 5720230
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcacat 220  Q
    ||||||||||||||||||||||||| |||||| ||||||| ||||||||||| ||||    
T  5720286 caccgttcataattttcaaacgttaacgcaataaaaagagtgaaaagacgggaacat 5720230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 17702659 - 17702706
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaaga 211  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||    
T  17702659 caccgttcataattttcaaacgttagcgcaataaaaagagcggaaaga 17702706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 23091187 - 23091131
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcacat 220  Q
    ||||| |||||||||||||||| || |||||| ||||||||| ||||||||||||||    
T  23091187 caccgctcataattttcaaacggtaacgcaataaaaagagcggaaagacgggcacat 23091131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 161001 - 161051
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    ||||||||||||||||||||| |||||| ||| ||||||||| ||||||||    
T  161001 caccgttcataattttcaaacattagcgtaataaaaagagcggaaagacgg 161051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 669829 - 669875
Alignment:
Q  165 accgttcataattttcaaacgttagcgcaattaaaagagcgaaaaga 211  Q
    ||||||||||||||||||||||||| ||||| ||||||||| |||||    
T  669829 accgttcataattttcaaacgttagtgcaataaaaagagcggaaaga 669875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 37143660 - 37143614
Alignment:
Q  169 ttcataattttcaaacgttagcgcaattaaaagagcgaaaagacggg 215  Q
    ||||||||||||||||||||||||||| |||| |||| |||||||||    
T  37143660 ttcataattttcaaacgttagcgcaataaaaaaagcggaaagacggg 37143614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 5190629 - 5190674
Alignment:
Q  167 cgttcataattttcaaacgttagcgcaattaaaagagcgaaaagac 212  Q
    ||||||||||||||||| ||||||||||| ||||||||| ||||||    
T  5190629 cgttcataattttcaaatgttagcgcaataaaaagagcggaaagac 5190674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 7438124 - 7438071
Alignment:
Q  165 accgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    |||||||||||||| |||||||||||| ||| |||| |||| ||||||||||||    
T  7438124 accgttcataatttacaaacgttagcgtaataaaaatagcggaaagacgggcac 7438071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 5499199 - 5499255
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcacat 220  Q
    |||||||||||||||||||||||||| ||||| ||||||| | | ||| ||||||||    
T  5499199 caccgttcataattttcaaacgttagagcaataaaaagagtggagagatgggcacat 5499255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 17702435 - 17702387
Alignment:
Q  172 ataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcacat 220  Q
    |||||||||||||||||||||| | ||||||||| ||||| ||||||||    
T  17702435 ataattttcaaacgttagcgcagtaaaaagagcggaaagaggggcacat 17702387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 26088916 - 26088971
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcacat 220  Q
    ||||||||||||||||||||| |||||| ||| ||||||| | ||||||||||||||    
T  26088916 caccgttcataattttcaaactttagcg-aataaaaagagtggaaagacgggcacat 26088971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 11064357 - 11064306
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacggg 215  Q
    |||| ||||||||||||||| ||||||||||| |||| || |||||||||||    
T  11064357 caccattcataattttcaaatgttagcgcaataaaaaaagtgaaaagacggg 11064306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 214
Target Start/End: Original strand, 35519269 - 35519316
Alignment:
Q  167 cgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    |||||||||||||||||||||| | |||| ||||||||| ||||||||    
T  35519269 cgttcataattttcaaacgttaacacaataaaaagagcggaaagacgg 35519316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 37143185 - 37143138
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaaga 211  Q
    ||||||||||||||||||||||||| |||||| ||||||  |||||||    
T  37143185 caccgttcataattttcaaacgttaacgcaataaaaagattgaaaaga 37143138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 35034685 - 35034636
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    |||||||||||||||||||||||| |||||| ||||| |||| ||||||||    
T  35034685 caccgttcataattttcaaacgttcgcgcaa-taaaaaagcggaaagacgg 35034636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 23986160 - 23986111
Alignment:
Q  169 ttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    |||||||||||||||||||||| |||| |||||| ||  |||||||||||    
T  23986160 ttcataattttcaaacgttagctcaataaaaagatcgggaagacgggcac 23986111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 35447543 - 35447490
Alignment:
Q  167 cgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcacat 220  Q
    ||||||||||||| |||| ||||| |||| ||||||||| ||||||||| ||||    
T  35447543 cgttcataatttttaaaccttagcacaataaaaagagcggaaagacgggaacat 35447490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 10128619 - 10128671
Alignment:
Q  168 gttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcacat 220  Q
    |||| |||||||| |||||||||||||| ||||||||| ||| |||| |||||    
T  10128619 gttcgtaattttcgaacgttagcgcaataaaaagagcggaaatacggacacat 10128671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 15849755 - 15849795
Alignment:
Q  172 ataattttcaaacgttagcgcaattaaaagagcgaaaagac 212  Q
    ||||||||||||||||||| |||| ||||||||| ||||||    
T  15849755 ataattttcaaacgttagcccaataaaaagagcggaaagac 15849795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 21122420 - 21122468
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagac 212  Q
    ||||||||||||||||||||||||  || ||| ||||||||| ||||||    
T  21122420 caccgttcataattttcaaacgttgacgtaataaaaagagcggaaagac 21122468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 34659435 - 34659471
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaa 200  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  34659435 caccgttcataattatcaaacgttagcgcaataaaaa 34659471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 37013173 - 37013133
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagc 204  Q
    ||||||||||||||||||||| ||||| |||| ||||||||    
T  37013173 caccgttcataattttcaaactttagcacaataaaaagagc 37013133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 244 - 196
Alignment:
Q  167 cgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacggg 215  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||    
T  244 cgttcataattttcaaacgttagcgcaaaaaaaagagcgaaaagacggg 196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 33573663 - 33573711
Alignment:
Q  167 cgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacggg 215  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||    
T  33573663 cgttcataattttcaaacgttagcgcaaaaaaaagagcgaaaagacggg 33573711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 32531312 - 32531361
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacg 213  Q
    ||||||| |||||||||||||||||||||||| ||||||||| |||||||    
T  32531312 caccgttaataattttcaaacgttagcgcaataaaaagagcggaaagacg 32531361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 9894295 - 9894247
Alignment:
Q  167 cgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacggg 215  Q
    ||||||||||||||||||||||| ||||| ||||||| |||||||||||    
T  9894295 cgttcataattttcaaacgttagtgcaataaaaagagtgaaaagacggg 9894247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 10587658 - 10587700
Alignment:
Q  169 ttcataattttcaaacgttagcgcaattaaaagagcgaaaaga 211  Q
    ||||||||||||||||||| ||||||| |||||||||||||||    
T  10587658 ttcataattttcaaacgttggcgcaataaaaagagcgaaaaga 10587700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 12169746 - 12169696
Alignment:
Q  168 gttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    ||||||||||||||||| ||| |||||| ||||||||| ||||||||||||    
T  12169746 gttcataattttcaaacattaacgcaataaaaagagcggaaagacgggcac 12169696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 24062809 - 24062859
Alignment:
Q  168 gttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    ||||||||||||||||||| |||||||| ||||||||| ||| ||||||||    
T  24062809 gttcataattttcaaacgtcagcgcaataaaaagagcggaaaaacgggcac 24062859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 21104758 - 21104810
Alignment:
Q  168 gttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcacat 220  Q
    |||||||| |||||||||||||| |||| ||||| |||||||||||| |||||    
T  21104758 gttcataactttcaaacgttagcacaataaaaagtgcgaaaagacggacacat 21104810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 4996777 - 4996722
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcaca 219  Q
    |||||||||||||||||||||||||| ||||| |||||| ||  || |||||||||    
T  4996777 caccgttcataattttcaaacgttagtgcaatgaaaagaacggtaaaacgggcaca 4996722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 10343267 - 10343228
Alignment:
Q  172 ataattttcaaacgttagcgcaattaaaagagcgaaaaga 211  Q
    ||||||||||||| |||||||||| |||||||||||||||    
T  10343267 ataattttcaaacattagcgcaataaaaagagcgaaaaga 10343228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 17264146 - 17264197
Alignment:
Q  167 cgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    |||| |||||||||||||||||| | ||| ||||||||| ||||||||||||    
T  17264146 cgttaataattttcaaacgttagtgtaataaaaagagcggaaagacgggcac 17264197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 195
Target Start/End: Complemental strand, 22534933 - 22534902
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaat 195  Q
    ||||||||||||||||||||||||||||||||    
T  22534933 caccgttcataattttcaaacgttagcgcaat 22534902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 26251816 - 26251765
Alignment:
Q  168 gttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcaca 219  Q
    |||||||||||||||||||||||||||| |||||| |  |||||||| ||||    
T  26251816 gttcataattttcaaacgttagcgcaataaaaagaacagaaagacggacaca 26251765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 28592858 - 28592909
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacggg 215  Q
    |||| |||||||||||||| | |||||||||| ||||||||| |||||||||    
T  28592858 caccattcataattttcaaccattagcgcaataaaaagagcggaaagacggg 28592909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 209
Target Start/End: Original strand, 1212059 - 1212093
Alignment:
Q  175 attttcaaacgttagcgcaattaaaagagcgaaaa 209  Q
    ||||||||||||||||||||| |||||||||||||    
T  1212059 attttcaaacgttagcgcaataaaaagagcgaaaa 1212093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 1190713 - 1190765
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggca 217  Q
    ||||||||||||||| ||||||||||| |||| ||||||||| |||||| ||||    
T  1190713 caccgttcataattt-caaacgttagcacaataaaaagagcggaaagacaggca 1190765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 5442479 - 5442438
Alignment:
Q  167 cgttcataattttcaaacgttagcgcaattaaaagagcgaaa 208  Q
    |||| ||||||||||||||||||| |||| ||||||||||||    
T  5442479 cgtttataattttcaaacgttagcacaataaaaagagcgaaa 5442438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 6874993 - 6874952
Alignment:
Q  173 taattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    ||||||| ||||||||||||||| ||||||| ||||||||||    
T  6874993 taatttttaaacgttagcgcaataaaaagagagaaaagacgg 6874952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 2441635 - 2441683
Alignment:
Q  166 ccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    |||||||||||||||||| |||| |||||| |||| | |||||||||||    
T  2441635 ccgttcataattttcaaatgttaacgcaataaaaaaatcgaaaagacgg 2441683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 32349256 - 32349216
Alignment:
Q  169 ttcataattttcaaacgttagcgcaattaaaagagcgaaaa 209  Q
    ||||||||||||||||||||||||||| || |||| |||||    
T  32349256 ttcataattttcaaacgttagcgcaataaagagagagaaaa 32349216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 18683 - 18732
Alignment:
Q  169 ttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    ||||||||||| ||||||||||||||| ||||||||| ||||||||||||    
T  18683 ttcataatttttaaacgttagcgcaataaaaagagcggaaagacgggcac 18732  T

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Target: scaffold0240 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 2701 - 2750
Alignment:
Q  169 ttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    ||||||||||| ||||||||||||||| ||||||||| ||||||||||||    
T  2701 ttcataatttttaaacgttagcgcaataaaaagagcggaaagacgggcac 2750  T

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Target: scaffold0068 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 57490 - 57439
Alignment:
Q  167 cgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    ||||||||||||||||||||||||||||| |||| |||  ||||||||||||    
T  57490 cgttcataattttcaaacgttagcgcaataaaaatagcagaaagacgggcac 57439  T

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Target: scaffold0268 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 21407 - 21453
Alignment:
Q  168 gttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    ||||||||||||||||| |||||||||| ||||||||| ||||||||    
T  21407 gttcataattttcaaactttagcgcaataaaaagagcggaaagacgg 21453  T

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Target: scaffold0123 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 30720 - 30666
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcac 218  Q
    ||||||||| ||||||| || ||||||||||| |||||||||||||||| |||||    
T  30720 caccgttcaaaattttctaaagttagcgcaataaaaagagcgaaaagacaggcac 30666  T

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Target: scaffold0649 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0649
Description:

Target: scaffold0649; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 8302 - 8249
Alignment:
Q  167 cgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcacat 220  Q
    ||||||||||||| ||||||||||| ||| ||||||||| |||||||| |||||    
T  8302 cgttcataatttttaaacgttagcgtaataaaaagagcggaaagacggacacat 8249  T

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Target: scaffold0036 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 61544 - 61592
Alignment:
Q  167 cgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacggg 215  Q
    ||||||||||||||||| |||| ||||||||||| |||| |||||||||    
T  61544 cgttcataattttcaaatgttaacgcaattaaaaaagcgtaaagacggg 61592  T

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Target: scaffold1379 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 220
Target Start/End: Complemental strand, 1538 - 1483
Alignment:
Q  165 accgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgggcacat 220  Q
    ||||||||||||||||||||||||  ||||| |||| |||  ||||||||||||||    
T  1538 accgttcataattttcaaacgttaatgcaataaaaaaagcagaaagacgggcacat 1483  T

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Target: scaffold0229 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 209
Target Start/End: Original strand, 13221 - 13255
Alignment:
Q  175 attttcaaacgttagcgcaattaaaagagcgaaaa 209  Q
    ||||||||||||||||||||| |||||||||||||    
T  13221 attttcaaacgttagcgcaataaaaagagcgaaaa 13255  T

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Target: scaffold0294 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 1735 - 1783
Alignment:
Q  166 ccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagacgg 214  Q
    |||||||||||||| |||||||| |||||| |||||| | |||||||||    
T  1735 ccgttcataatttttaaacgttaacgcaataaaaagaacaaaaagacgg 1783  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 254695 - 254743
Alignment:
Q  164 caccgttcataattttcaaacgttagcgcaattaaaagagcgaaaagac 212  Q
    ||||||||||||| |||||||||||| ||||| ||||||| | ||||||    
T  254695 caccgttcataatcttcaaacgttagtgcaataaaaagagtggaaagac 254743  T

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