View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14409_low_12 (Length: 367)
Name: NF14409_low_12
Description: NF14409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14409_low_12 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 17 - 367
Target Start/End: Original strand, 33904535 - 33904885
Alignment:
| Q |
17 |
ttcaaatatctatggtgaaattgcatttgctttctttatgtttgtttacgcatcatctgcaaatatatctagtatcccaaaaatgtgataagtaagaaag |
116 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33904535 |
ttcaaatatctatggtgaaattgcattttctttctttatgtttgtttacgcatcatctgcaaatatatctaatatcccaaaaatgtgataagtaagaaag |
33904634 |
T |
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| Q |
117 |
aaagaaataacccctcgacacctggaatccatgaagaatcaacacttcaaattgaaggtgtctccagtgttcatatgtgttggtttagggcaccaacacg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33904635 |
aaagaaataacccctcgacacctggaatccatgaagaatcaacacttcaaattgaaggtgtctccagtgttcatatgtgttggtttagggcaccaacacg |
33904734 |
T |
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| Q |
217 |
acactgtcgcatgtggtcacattcaattacttttattttcgcaaattatttctggtgtctacgtgtaactgtagtgtcatgtccagtgccggtcatgctt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33904735 |
acactgtcgcatgtggtcacattcaattacttttattttcgcaaattatttctggtgtctacgtgtaactgtagtgtcatgtccagtgccggtcatgctt |
33904834 |
T |
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| Q |
317 |
catagcccggaattggactcctctcccttcatgtgcctttgcttctacact |
367 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| || |||||| |
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| T |
33904835 |
catagcccggaattggactcctctcccttcatgtgccattgattatacact |
33904885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 9018879 - 9018932
Alignment:
| Q |
225 |
gcatgtggtcacattcaattacttttattttcgcaaattatttctggtgtctac |
278 |
Q |
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| T |
9018879 |
gcatgtggttacattcaattactttcattttctcaaattactactggtgtctac |
9018932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 17 - 353
Target Start/End: Original strand, 35955952 - 35956288
Alignment:
| Q |
17 |
ttcaaatatctatggtgaaattgcatttgctttctttatgtttgtttacgcatcatctgcaaatatatctagtatcccaaaaatgtgataagtaagaaag |
116 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35955952 |
ttcaaatatctatggtgagattgcatttgctttctttatgtttgtttacgcatcatctgcaaatatatctaatatcccaaaaatgtgataagtaagaaag |
35956051 |
T |
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| Q |
117 |
aaagaaataacccctcgacacctggaatccatgaagaatcaacacttcaaattgaaggtgtctccagtgttcatatgtgttggtttagggcaccaacacg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35956052 |
aaagaaataacccctcgacacctggaatccatgaagaatcaacacttcaaattgaaggtgtctccagtgttcatatgtgttggtttagggcaccaacacg |
35956151 |
T |
|
| Q |
217 |
acactgtcgcatgtggtcacattcaattacttttattttcgcaaattatttctggtgtctacgtgtaactgtagtgtcatgtccagtgccggtcatgctt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35956152 |
acactgtcgcatgtggtcacattcaattacttttattttcgcaaattatttctggtgtctacgtgtaactgtagtgtcatgtccagtgccggtcatgctt |
35956251 |
T |
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| Q |
317 |
catagcccggaattggactcctctcccttcatgtgcc |
353 |
Q |
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| T |
35956252 |
catagcccggaattggactcctctcccttcatgtgcc |
35956288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 278
Target Start/End: Complemental strand, 10042340 - 10042288
Alignment:
| Q |
226 |
catgtggtcacattcaattacttttattttcgcaaattatttctggtgtctac |
278 |
Q |
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|||||||| ||||||||| |||| ||||||| ||||||||| ||||||||||| |
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| T |
10042340 |
catgtggttacattcaatcacttctattttcacaaattattactggtgtctac |
10042288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 18542221 - 18542270
Alignment:
| Q |
226 |
catgtggtcacattcaattacttttattttcgcaaattatttctggtgtc |
275 |
Q |
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|||||| | |||||||||||||| ||||||| ||||||||| |||||||| |
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| T |
18542221 |
catgtgattacattcaattacttgtattttctcaaattattactggtgtc |
18542270 |
T |
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