View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14409_low_17 (Length: 280)
Name: NF14409_low_17
Description: NF14409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14409_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 25378416 - 25378148
Alignment:
| Q |
1 |
tgtactttccactttggatttgtttaactatggtttgtttgttttgtcctatgggtttggactttgcatgaaattatgcaacattttgttatgttagtgt |
100 |
Q |
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| T |
25378416 |
tgtactttccactttggattggtttaactatggtttgtttgttttgtcctatgggtttggactttgcatgaaattatgcaacattttgttattttagtgt |
25378317 |
T |
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| Q |
101 |
tattgttactttttctaaatttgatatctttcgcgtgcaattttgaataccaacatctctgattttgagacttaaatgaacagctaaatcttttacgtac |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
25378316 |
tattgttactttttttaaatttgatatctttcgcgtgcaactttgaatacctacatctctgattttgagacttaaatgaacaactaaatcttttacgtat |
25378217 |
T |
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| Q |
201 |
aactttctcagattttgtgagaccgaaatggttgttaaactttagttaagttagaattgacctatgttt |
269 |
Q |
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|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25378216 |
aattttctcggattttgtgagaccgaaatggttgttaaactttagttaagttagaattaacctatgttt |
25378148 |
T |
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